ggKbase home page

L2_026_374G1_scaffold_52

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_026_374G1_scaffold_52_1
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..280
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7JWU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN47696.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L2_026_374G1_scaffold_52_2
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

449..1924
DNA (1476bp) protein (492aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=2 Tax=Clostridiales RepID=F7JXF4_9FIRM
L2_026_374G1_scaffold_52_3
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1939..4167
DNA (2229bp) protein (743aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Primosomal protein N n=3 Tax=Lachnospiraceae RepID=A7B7D1_RUMGN
primosomal protein N (replication factor Y) - superfamily II helicase
L2_026_374G1_scaffold_52_4
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4206..4685
DNA (480bp) protein (160aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=3 Tax=Lachnospiraceae RepID=A7B7D0_RUMGN
L2_026_374G1_scaffold_52_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4686..5618
DNA (933bp) protein (311aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=2 Tax=Lachnospiraceae RepID=A7B7C9_RUMGN
L2_026_374G1_scaffold_52_6
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5641..6339
DNA (699bp) protein (233aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=V8BWY8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47690.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
putative Zn-dependent protease
L2_026_374G1_scaffold_52_7
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6332..7678
DNA (1347bp) protein (449aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ribosomal RNA small subunit methyltransferase RsmB (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase B n=3 Tax=Lachnospiraceae RepID=A7B7C7_RUMGN
L2_026_374G1_scaffold_52_8
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7694..8734
DNA (1041bp) protein (347aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7JWT9_9FIRM
L2_026_374G1_scaffold_52_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8747..9490
DNA (744bp) protein (248aa)
Serine/threonine protein phosphatase (EC:3.1.3.16)
Protein phosphatase 2C n=3 Tax=Lachnospiraceae RepID=A7B7C5_RUMGN
Protein phosphatase 2C {ECO:0000313|EMBL:EDN76387.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L2_026_374G1_scaffold_52_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9484..11577
DNA (2094bp) protein (698aa)
PASTA domain./Protein kinase domain. (EC:2.7.11.1)
Kinase domain protein n=2 Tax=Lachnospiraceae RepID=A7B7C4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47686.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L2_026_374G1_scaffold_52_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11592..12470
DNA (879bp) protein (293aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B7C3_RUMGN
L2_026_374G1_scaffold_52_12
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12474..13136
DNA (663bp) protein (221aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=2 Tax=Lachnospiraceae RepID=A7B7C2_RUMGN
L2_026_374G1_scaffold_52_13
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13129..13782
DNA (654bp) protein (218aa)
thiamine diphosphokinase (EC:2.7.6.2)
Thiamine diphosphokinase n=2 Tax=Lachnospiraceae RepID=A7B7C1_RUMGN
Thiamine pyrophosphokinase {ECO:0000313|EMBL:EGN47683.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L2_026_374G1_scaffold_52_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13800..14897
DNA (1098bp) protein (366aa)
Ribosome-binding ATPase YchF n=4 Tax=Clostridiales RepID=A7B7A9_RUMGN
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
GTP-binding protein YchF
L2_026_374G1_scaffold_52_15
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14916..15812
DNA (897bp) protein (299aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7JWT3_9FIRM
L2_026_374G1_scaffold_52_16
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16094..17767
DNA (1674bp) protein (558aa)
Oligoendopeptidase, M3 family {ECO:0000313|EMBL:EDN76368.1}; EC=3.4.24.- {ECO:0000313|EMBL:EDN76368.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Oligoendopeptidase, M3 family n=2 Tax=Lachnospiraceae RepID=A7B7A6_RUMGN
oligoendopeptidase, M3 family
L2_026_374G1_scaffold_52_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17899..19632
DNA (1734bp) protein (578aa)
ABC transporter, substrate-binding protein, family 5 n=3 Tax=Lachnospiraceae RepID=A7B7A5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47679.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
family 5 extracellular solute-binding protein
L2_026_374G1_scaffold_52_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19825..20787
DNA (963bp) protein (321aa)
ABC transporter, permease protein n=3 Tax=Clostridiales RepID=A7B7A4_RUMGN
ABC transporter, permease protein {ECO:0000313|EMBL:EDN76366.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
appB; Oligopeptide transport system permease protein AppB
L2_026_374G1_scaffold_52_19
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20803..21735
DNA (933bp) protein (311aa)
ABC transporter, permease protein n=4 Tax=Clostridiales RepID=A7B7A3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD18963.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
peptide ABC transporter permease
L2_026_374G1_scaffold_52_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21761..22747
DNA (987bp) protein (329aa)
ABC transporter, ATP-binding protein n=2 Tax=Lachnospiraceae RepID=A7B7A2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47676.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
appD; oligopeptide ABC transporter
L2_026_374G1_scaffold_52_21
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22748..23722
DNA (975bp) protein (325aa)
ABC transporter, ATP-binding protein n=4 Tax=Clostridiales RepID=A7B7A1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47675.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
appF1; Oligopeptide transport ATP-binding protein AppF
L2_026_374G1_scaffold_52_22
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23809..24135
DNA (327bp) protein (109aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5U706_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66911.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L2_026_374G1_scaffold_52_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24125..24331
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B799_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN76361.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L2_026_374G1_scaffold_52_24
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24388..27936
DNA (3549bp) protein (1183aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric (EC:1.2.7.-)
Pyruvate-flavodoxin oxidoreductase n=2 Tax=Lachnospiraceae RepID=A7B798_RUMGN
L2_026_374G1_scaffold_52_25
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28014..29261)
DNA (1248bp) protein (416aa)
Putative two component transcriptional regulator, AraC family n=1 Tax=Clostridium sp. D5 RepID=F0YXK3_9CLOT
Putative two component transcriptional regulator, AraC family {ECO:0000313|EMBL:EGB93691.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L2_026_374G1_scaffold_52_26
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29443..30087
DNA (645bp) protein (215aa)
Putative corrinoid methyltransferase protein n=1 Tax=Clostridium sp. D5 RepID=F0YXB0_9CLOT
Putative corrinoid methyltransferase protein {ECO:0000313|EMBL:EGB93598.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
methyltransferase cognate corrinoid protein
L2_026_374G1_scaffold_52_27
unknown

Not on your lists

30112..30219
DNA (108bp) protein (36aa)

This feature has no annotations

L2_026_374G1_scaffold_52_28
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30363..32528
DNA (2166bp) protein (722aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K2U9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN40735.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
ferredoxin
L2_026_374G1_scaffold_52_29
Firmicutes bacterium CAG:646, Firmicutes, Bacteria

Not on your lists

32664..33671
DNA (1008bp) protein (336aa)
MtaA/CmuA family methyltransferase n=1 Tax=Firmicutes bacterium CAG:646 RepID=R5R890_9FIRM
MtaA/CmuA family methyltransferase {ECO:0000313|EMBL:CCZ34959.1}; TaxID=1262995 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:646.;"
uroporphyrinogen-III decarboxylase
L2_026_374G1_scaffold_52_30
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33775..34170
DNA (396bp) protein (132aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7AZY1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47048.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
Displaying items 1-30 of 88 in total

View Taxonomy