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L2_026_374G1_scaffold_124

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_026_374G1_scaffold_124_1
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..4810)
DNA (4809bp) protein (1603aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7JWU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN47696.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
leucine Rich Repeat domain-containing protein
L2_026_374G1_scaffold_124_2
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5048..5935)
DNA (888bp) protein (296aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7JXF5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN47697.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Small-conductance mechanosensitive channel
L2_026_374G1_scaffold_124_3
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5938..6795)
DNA (858bp) protein (286aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=A7B0N3_RUMGN
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
conserved hypothetical protein TIGR00726
L2_026_374G1_scaffold_124_4
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6820..7173)
DNA (354bp) protein (118aa)
UPF0102 protein RUMGNA_01110 n=4 Tax=Clostridiales RepID=A7B0N4_RUMGN
UPF0102 protein HMPREF1201_01124 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
conserved hypothetical protein TIGR00252
L2_026_374G1_scaffold_124_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7209..7961)
DNA (753bp) protein (251aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=2 Tax=Lachnospiraceae RepID=A7B0N5_RUMGN
L2_026_374G1_scaffold_124_6
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7986..8543)
DNA (558bp) protein (186aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=4 Tax=Clostridiales RepID=A7B0N6_RUMGN
L2_026_374G1_scaffold_124_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8562..9428)
DNA (867bp) protein (289aa)
Ribosome biogenesis GTPase A n=3 Tax=Clostridiales RepID=A7B0N7_RUMGN
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ribosome biogenesis GTP-binding protein YlqF
L2_026_374G1_scaffold_124_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9443..10051)
DNA (609bp) protein (203aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0N8_RUMGN
L2_026_374G1_scaffold_124_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10117..10464)
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=4 Tax=Clostridiales RepID=A7B0N9_RUMGN
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ribosomal protein L19, bacterial type
L2_026_374G1_scaffold_124_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10568..11326)
DNA (759bp) protein (253aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Lachnospiraceae RepID=A7B0P0_RUMGN
L2_026_374G1_scaffold_124_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11358..11876)
DNA (519bp) protein (173aa)
Ribosome maturation factor RimM n=2 Tax=Ruminococcus gnavus RepID=A7B0P1_RUMGN
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
16S rRNA processing protein RimM
L2_026_374G1_scaffold_124_12
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11953..12183)
DNA (231bp) protein (77aa)
UPF0109 protein RUMGNA_01118 n=3 Tax=Lachnospiraceae RepID=A7B0P2_RUMGN
UPF0109 protein HMPREF1201_01132 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
RNA-binding protein (KH domain)
L2_026_374G1_scaffold_124_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12208..12453)
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=4 Tax=Clostridiales RepID=A7B0P3_RUMGN
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
SSU ribosomal protein S16P
L2_026_374G1_scaffold_124_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12499..13851)
DNA (1353bp) protein (451aa)
Signal recognition particle protein n=3 Tax=Clostridiales RepID=A7B0P4_RUMGN
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
signal recognition particle protein
L2_026_374G1_scaffold_124_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13853..14209)
DNA (357bp) protein (119aa)
Helix-turn-helix protein, YlxM/p13 family n=3 Tax=Lachnospiraceae RepID=A7B0P5_RUMGN
UPF0122 protein HMPREF1201_01135 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L2_026_374G1_scaffold_124_16
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14294..15190)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BW53_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD18995.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Subtilisin-like serine proteases
L2_026_374G1_scaffold_124_17
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15153..15608)
DNA (456bp) protein (152aa)
Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110kDa subunit n=1 Tax=Clostridium sp. D5 RepID=F0YYR9_9CLOT
Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110kDa subunit {ECO:0000313|EMBL:EGB93371.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L2_026_374G1_scaffold_124_18
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16063..16197)
DNA (135bp) protein (45aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B0V2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47715.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L2_026_374G1_scaffold_124_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16329..16853
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_58FAA RepID=F7JWW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN47716.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L2_026_374G1_scaffold_124_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16816..17070
DNA (255bp) protein (85aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TMN9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN47717.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L2_026_374G1_scaffold_124_21
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17155..17913
DNA (759bp) protein (253aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Pseudouridylate synthase (EC:5.4.99.12)
tRNA pseudouridine synthase A n=4 Tax=Clostridiales RepID=A7B0V5_RUMGN
L2_026_374G1_scaffold_124_22
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17913..18746
DNA (834bp) protein (278aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A7B0V6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ66952.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted membrane protein
L2_026_374G1_scaffold_124_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18748..19209)
DNA (462bp) protein (154aa)
pilD; type IV prepilin-like leader peptidase PilD (EC:3.4.23.43)
Peptidase, A24 family n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0V7_RUMGN
Peptidase, A24 family {ECO:0000313|EMBL:EDN78446.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L2_026_374G1_scaffold_124_24
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19206..20027)
DNA (822bp) protein (274aa)
PHP domain protein n=4 Tax=Clostridiales RepID=A7B0V8_RUMGN
PHP domain protein {ECO:0000313|EMBL:CCZ66954.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted metal-dependent phosphoesterases (PHP family)
L2_026_374G1_scaffold_124_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20181..21200)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=A7B0V9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN78448.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L2_026_374G1_scaffold_124_26
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21745..22305)
DNA (561bp) protein (187aa)
ATP:cob(I)alamin adenosyltransferase n=4 Tax=Clostridiales RepID=A7B0W0_RUMGN
ATP:cob(I)alamin adenosyltransferase {ECO:0000313|EMBL:CCZ66956.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ATP:cob(I)alamin adenosyltransferase
L2_026_374G1_scaffold_124_27
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22336..22665)
DNA (330bp) protein (110aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=A7B0W1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ66957.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L2_026_374G1_scaffold_124_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22662..24476)
DNA (1815bp) protein (605aa)
Diol dehydratase / glycerol dehydratase reactivase large subunit n=4 Tax=Clostridiales RepID=A7B0W2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47725.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
diol/glycerol dehydratase reactivating factor large subunit
L2_026_374G1_scaffold_124_29
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24473..24865)
DNA (393bp) protein (131aa)
Dehydratase small subunit n=2 Tax=Lachnospiraceae RepID=A7B0W3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN47726.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
dehydratase small subunit
L2_026_374G1_scaffold_124_30
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24866..25534)
DNA (669bp) protein (223aa)
Glycerol dehydratase, medium subunit {ECO:0000313|EMBL:EDN78453.1}; EC=4.2.1.30 {ECO:0000313|EMBL:EDN78453.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Glycerol dehydratase, medium subunit n=2 Tax=Lachnospiraceae RepID=A7B0W4_RUMGN
dehydratase medium subunit
Displaying items 1-30 of 67 in total

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