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L2_026_374G1_scaffold_185

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_026_374G1_scaffold_185_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..1320
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUQ4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22236.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Fe-S oxidoreductase
L2_026_374G1_scaffold_185_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1304..1996
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 PF80_9CLOT">RepID=R6PF80_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22235.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_026_374G1_scaffold_185_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1996..3180
DNA (1185bp) protein (395aa)
Ribonucleases G and E (EC:3.1.26.-)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PN05_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22234.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_026_374G1_scaffold_185_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3177..3959
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PD54_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22233.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_026_374G1_scaffold_185_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3973..4455
DNA (483bp) protein (161aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Clostridium nexile CAG:348 RepID=R6QJV1_9CLOT
ybaK/ebsC protein
L2_026_374G1_scaffold_185_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4567..5886
DNA (1320bp) protein (440aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
aspartate kinase (EC:2.7.2.4)
Aspartokinase n=2 Tax=Clostridium RepID=B6FNG8_9CLOT
L2_026_374G1_scaffold_185_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5904..6323
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 PF76_9CLOT">RepID=R6PF76_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22230.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_026_374G1_scaffold_185_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6362..6625
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PN00_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22229.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_026_374G1_scaffold_185_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6756..7064
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNG5_9CLOT
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LSU ribosomal protein L21P
L2_026_374G1_scaffold_185_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7077..7409
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNG4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22154.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted ribosomal protein
L2_026_374G1_scaffold_185_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7414..7698
DNA (285bp) protein (95aa)
50S ribosomal protein L27 n=2 Tax=Clostridium RepID=B6FNG3_9CLOT
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LSU ribosomal protein L27P
L2_026_374G1_scaffold_185_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7813..9096
DNA (1284bp) protein (428aa)
GTPase Obg n=1 Tax=Clostridium nexile CAG:348 RepID=R6QJN3_9CLOT
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Obg family GTPase CgtA
L2_026_374G1_scaffold_185_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9112..9402
DNA (291bp) protein (97aa)
RNA-binding protein, YhbY family n=2 Tax=Clostridium RepID=B6FNG1_9CLOT
RNA-binding protein, YhbY family {ECO:0000313|EMBL:EEA82453.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
conserved hypothetical protein TIGR00253
L2_026_374G1_scaffold_185_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9426..10058
DNA (633bp) protein (211aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Clostridium nexile CAG:348 PF12_9CLOT">RepID=R6PF12_9CLOT
L2_026_374G1_scaffold_185_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10036..10614
DNA (579bp) protein (193aa)
Hydrolase, HD family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNF9_9CLOT
Hydrolase, HD family {ECO:0000313|EMBL:EEA82451.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
putative nicotinate-nucleotide adenylyltransferase
L2_026_374G1_scaffold_185_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10617..10967
DNA (351bp) protein (117aa)
Ribosomal silencing factor RsfS n=2 Tax=Clostridium RepID=B6FNF8_9CLOT
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
iojap-related protein
L2_026_374G1_scaffold_185_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11004..12443)
DNA (1440bp) protein (480aa)
Aldehyde dehydrogenase (NAD) family protein {ECO:0000313|EMBL:EEA82449.1}; EC=1.2.1.- {ECO:0000313|EMBL:EEA82449.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
gapN; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.9)
Aldehyde dehydrogenase (NAD) family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNF7_9CLOT
L2_026_374G1_scaffold_185_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12796..13413)
DNA (618bp) protein (206aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
LexA repressor n=2 Tax=Clostridium RepID=B6FNF6_9CLOT
transcriptional repressor, LexA family protein
L2_026_374G1_scaffold_185_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13675..13968
DNA (294bp) protein (98aa)
LysM domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNF5_9CLOT
LysM domain protein {ECO:0000313|EMBL:EEA82447.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_026_374G1_scaffold_185_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14148..15218
DNA (1071bp) protein (357aa)
Phage integrase SAM-like domain protein n=2 Tax=Clostridium RepID=B6FNF4_9CLOT
Phage integrase SAM-like domain protein {ECO:0000313|EMBL:EEA82446.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Site-specific recombinase XerD
L2_026_374G1_scaffold_185_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15273..15719)
DNA (447bp) protein (149aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160046};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-tyrosyl-tRNA(Tyr) deacylase n=2 Tax=Clostridium RepID=B6FNF3_9CLOT
L2_026_374G1_scaffold_185_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15874..16608
DNA (735bp) protein (245aa)
PP-loop family protein n=2 Tax=Clostridium RepID=B6FNF2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22142.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
PP-loop domain-containing protein
L2_026_374G1_scaffold_185_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16654..17298)
DNA (645bp) protein (215aa)
Cytidylate kinase (EC:2.7.4.14)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNF1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82443.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_026_374G1_scaffold_185_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17401..18318)
DNA (918bp) protein (306aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Pseudouridine synthase, RluA family n=2 Tax=Clostridium RepID=B6FNF0_9CLOT
RluA family pseudouridine synthase
L2_026_374G1_scaffold_185_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18321..18863)
DNA (543bp) protein (181aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNE9_9CLOT
L2_026_374G1_scaffold_185_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18886..19641)
DNA (756bp) protein (252aa)
S4 domain protein n=2 Tax=Clostridium RepID=B6FNE8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22138.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized conserved protein, contains S4-like domain
L2_026_374G1_scaffold_185_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19652..20194)
DNA (543bp) protein (181aa)
Cell division protein SepF n=2 Tax=Clostridium RepID=B6FNE7_9CLOT
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_026_374G1_scaffold_185_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20221..20916)
DNA (696bp) protein (232aa)
Pyridoxal phosphate enzyme, YggS family n=2 Tax=Clostridium RepID=B6FNE6_9CLOT
Pyridoxal phosphate enzyme, YggS family {ECO:0000313|EMBL:EEA82438.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
pyridoxal phosphate enzyme, YggS family
L2_026_374G1_scaffold_185_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20932..22314)
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 PF00_9CLOT">RepID=R6PF00_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22135.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_026_374G1_scaffold_185_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22326..23273)
DNA (948bp) protein (316aa)
Radical SAM protein, TIGR01212 family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNE4_9CLOT
Radical SAM protein, TIGR01212 family {ECO:0000313|EMBL:EEA82436.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
radical SAM protein, TIGR01212 family
Displaying items 1-30 of 56 in total

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