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L2_026_374G1_scaffold_328

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_026_374G1_scaffold_328_1
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..758
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM38229.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L2_026_374G1_scaffold_328_2
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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911..1384
DNA (474bp) protein (158aa)
Transcription elongation factor GreA n=3 Tax=Clostridiales RepID=G9YWW9_9FIRM
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
greA; transcription elongation factor GreA
L2_026_374G1_scaffold_328_3
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1396..3345
DNA (1950bp) protein (650aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Lysyl-tRNA synthetase (class II) (EC:6.1.1.6)
Lysine--tRNA ligase n=2 Tax=Clostridiales RepID=G9YWW8_9FIRM
L2_026_374G1_scaffold_328_4
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3577..4959
DNA (1383bp) protein (461aa)
TrkH family potassium uptake protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF51_9FIRM
TrkH family potassium uptake protein {ECO:0000313|EMBL:EHO32790.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
putative cation transport protein, Trk family
L2_026_374G1_scaffold_328_5
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4998..5651
DNA (654bp) protein (218aa)
Putative Ktr system potassium uptake protein A n=2 Tax=Clostridiales RepID=G9YWW6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54591.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ktrC; NAD-binding site
L2_026_374G1_scaffold_328_6
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5663..6421
DNA (759bp) protein (253aa)
RNA methyltransferase (EC:2.1.1.-)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54592.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L2_026_374G1_scaffold_328_7
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6512..7720
DNA (1209bp) protein (403aa)
DNA protecting protein DprA n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF48_9FIRM
DNA protecting protein DprA {ECO:0000313|EMBL:EHO32787.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
putative smf protein
L2_026_374G1_scaffold_328_8
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7742..10072
DNA (2331bp) protein (777aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
topA; DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CGR7_9CLOT
L2_026_374G1_scaffold_328_9
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10151..10864
DNA (714bp) protein (238aa)
Protein TraX n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWW2_9FIRM
Protein TraX {ECO:0000313|EMBL:EHM38221.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
TraX family protein
L2_026_374G1_scaffold_328_10
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10886..11503
DNA (618bp) protein (206aa)
Putative iron-sulfur flavoprotein MJ1083 n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2ARJ2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF54596.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L2_026_374G1_scaffold_328_11
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11525..12829
DNA (1305bp) protein (435aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
trmFO; tRNA methyltransferase (EC:2.1.1.74)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWW0_9FIRM
L2_026_374G1_scaffold_328_12
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13119..13373)
DNA (255bp) protein (85aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=G9YWV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54598.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L2_026_374G1_scaffold_328_13
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13441..13692
DNA (252bp) protein (84aa)
DNA-binding helix-turn-helix protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54599.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
XRE family transcriptional regulator
L2_026_374G1_scaffold_328_14
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13992..15014
DNA (1023bp) protein (341aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
plsX; acyl-ACP--phosphate acyltransferase (EC:2.3.1.-)
Phosphate acyltransferase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWV7_9FIRM
L2_026_374G1_scaffold_328_15
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15119..15352
DNA (234bp) protein (78aa)
Acyl carrier protein n=3 Tax=Clostridiales RepID=G9YWV6_9FIRM
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
acp; acyl carrier protein
L2_026_374G1_scaffold_328_16
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15418..16095
DNA (678bp) protein (226aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2B997_9CLOT
L2_026_374G1_scaffold_328_17
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16607..20176
DNA (3570bp) protein (1190aa)
Chromosome partition protein Smc n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWV3_9FIRM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
smc; chromosome segregation protein SMC
L2_026_374G1_scaffold_328_18
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20421..20918
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWV2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM38211.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L2_026_374G1_scaffold_328_19
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20942..21841
DNA (900bp) protein (300aa)
Signal recognition particle receptor FtsY n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CGN4_9CLOT
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
signal recognition particle-docking protein FtsY
L2_026_374G1_scaffold_328_20
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21900..22616
DNA (717bp) protein (239aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
rph; ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH n=3 Tax=Clostridiales RepID=G9YWV0_9FIRM
L2_026_374G1_scaffold_328_21
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


22621..23211
DNA (591bp) protein (197aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
rdgB; nucleoside-triphosphatase (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU9_9FIRM
L2_026_374G1_scaffold_328_22
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23254..23577
DNA (324bp) protein (108aa)
RNA-binding protein, YhbY family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54515.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L2_026_374G1_scaffold_328_23
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23597..24805
DNA (1209bp) protein (403aa)
Nicotinate-nucleotide adenylyltransferase {ECO:0000256|SAAS:SAAS00086517}; EC=2.7.7.18 {ECO:0000256|SAAS:SAAS00086517};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
nadD; nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18)
Nicotinate (Nicotinamide) nucleotide adenylyltransferase n=2 Tax=Clostridiales RepID=H1CF31_9FIRM
L2_026_374G1_scaffold_328_24
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24805..26262
DNA (1458bp) protein (486aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU6_9FIRM
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:EHM38205.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
putative LytR family regulatory protein
L2_026_374G1_scaffold_328_25
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26279..27766
DNA (1488bp) protein (496aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU5_9FIRM
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:EHM38204.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
putative LytR family regulatory protein
L2_026_374G1_scaffold_328_26
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27779..28138
DNA (360bp) protein (120aa)
Ribosomal silencing factor RsfS n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF28_9FIRM
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L2_026_374G1_scaffold_328_27
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28251..28760
DNA (510bp) protein (170aa)
RNA polymerase sigma-70 factor, sigma-E family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54520.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ECF subfamily RNA polymerase sigma-24 subunit
L2_026_374G1_scaffold_328_28
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28757..30094
DNA (1338bp) protein (446aa)
Uncharacterized protein (Fragment) n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BG12_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI71130.1}; Flags: Fragment;; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
Displaying 28 items

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