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L2_026_374G1_scaffold_330

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_026_374G1_scaffold_330_1
unknown

Not on your lists

comp(83..211)
DNA (129bp) protein (43aa)

This feature has no annotations

L2_026_374G1_scaffold_330_2
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(571..2442)
DNA (1872bp) protein (624aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G963_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR46217.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
hypothetical protein
L2_026_374G1_scaffold_330_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2550..3263)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPT6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81947.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_026_374G1_scaffold_330_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3266..5560)
DNA (2295bp) protein (765aa)
Aconitase A (EC:4.2.1.3)
Aconitase family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPT7_9CLOT
Aconitase family protein {ECO:0000313|EMBL:EEA81948.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_026_374G1_scaffold_330_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5606..6691)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYZ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23696.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
transcriptional regulator CdaR
L2_026_374G1_scaffold_330_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6755..8104)
DNA (1350bp) protein (450aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPT9_9CLOT
L2_026_374G1_scaffold_330_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8431..10104)
DNA (1674bp) protein (558aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PSG4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23694.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC transporter permease
L2_026_374G1_scaffold_330_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10094..11113)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PH56_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23693.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
spermidine/putrescine ABC transporter ATP-binding protein
L2_026_374G1_scaffold_330_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11183..12256)
DNA (1074bp) protein (358aa)
ABC transporter, solute-binding protein n=2 Tax=Clostridium RepID=B6FPU2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23692.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Fe3+ ABC transporter periplasmic component-like protein
L2_026_374G1_scaffold_330_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12405..13166)
DNA (762bp) protein (254aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FPU3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23691.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_026_374G1_scaffold_330_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13327..14019)
DNA (693bp) protein (231aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
methylthioadenosine nucleosidase (EC:3.2.2.16 3.2.2.9)
MTA/SAH nucleosidase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPU4_9CLOT
L2_026_374G1_scaffold_330_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14036..15172)
DNA (1137bp) protein (379aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PSG0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23689.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
carboxynorspermidine decarboxylase
L2_026_374G1_scaffold_330_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15202..16404)
DNA (1203bp) protein (401aa)
carboxynorspermidine dehydrogenase (EC:1.5.1.7)
Saccharopine dehydrogenase n=3 Tax=Clostridium RepID=B6FPU8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23688.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_026_374G1_scaffold_330_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16433..17290)
DNA (858bp) protein (286aa)
Agmatinase {ECO:0000313|EMBL:EEA81924.1}; EC=3.5.3.11 {ECO:0000313|EMBL:EEA81924.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
speB1; Agmatinase (EC:3.5.3.11)
Agmatinase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPU9_9CLOT
L2_026_374G1_scaffold_330_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17280..18131)
DNA (852bp) protein (284aa)
spermidine synthase (EC:2.5.1.16)
Spermidine synthase n=2 Tax=Clostridium RepID=B6FPV0_9CLOT
Polyamine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Putrescine aminopropyltransferase {ECO:0000256|HAMAP-Rule:MF_00198}; Spermidine synthase {ECO:0000256|HAMAP-Rule:MF_00198}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_026_374G1_scaffold_330_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18148..19596)
DNA (1449bp) protein (483aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PJG6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23685.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Orn/Lys/Arg decarboxylase major region
L2_026_374G1_scaffold_330_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20197..20439
DNA (243bp) protein (81aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PSF5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23684.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_026_374G1_scaffold_330_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20764..21231)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PH46_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23683.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_026_374G1_scaffold_330_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21297..22112)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QP10_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23682.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_026_374G1_scaffold_330_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22247..23311
DNA (1065bp) protein (355aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=2 Tax=Clostridium RepID=B6FPV7_9CLOT
L2_026_374G1_scaffold_330_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23362..23928)
DNA (567bp) protein (189aa)
Sigma-70 region 2 n=2 Tax=Clostridium RepID=B6FPV8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23680.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
RNA polymerase sigma factor, sigma-70 family
L2_026_374G1_scaffold_330_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23950..24363)
DNA (414bp) protein (138aa)
Protein hit n=2 Tax=Clostridium RepID=B6FPV9_9CLOT
Protein hit {ECO:0000313|EMBL:EEA81934.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
L2_026_374G1_scaffold_330_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24490..25227
DNA (738bp) protein (246aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPW0_9CLOT
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L2_026_374G1_scaffold_330_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25114..25707)
DNA (594bp) protein (198aa)
Peptidase, S54 family {ECO:0000313|EMBL:EEA81936.1}; EC=3.4.21.- {ECO:0000313|EMBL:EEA81936.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Peptidase, S54 family n=2 Tax=Clostridium RepID=B6FPW1_9CLOT
Uncharacterized membrane protein (homolog of Drosophila rhomboid)
L2_026_374G1_scaffold_330_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25765..26487)
DNA (723bp) protein (241aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FPW2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23676.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_026_374G1_scaffold_330_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26484..26894)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPW3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81938.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_026_374G1_scaffold_330_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26891..27313)
DNA (423bp) protein (141aa)
Peptidase, A24 family n=2 Tax=Clostridium RepID=B6FPW4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23674.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Type IV leader peptidase family.
L2_026_374G1_scaffold_330_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27301..28188)
DNA (888bp) protein (296aa)
TadE-like protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPW5_9CLOT
TadE-like protein {ECO:0000313|EMBL:EEA81940.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_026_374G1_scaffold_330_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28203..29537)
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QP00_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23672.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
Displaying 29 items

View Taxonomy