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L2_031_000G1_scaffold_9

Search features with annotation key words

Displaying items 1-30 of 209 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_031_000G1_scaffold_9_1
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..114
DNA (114bp) protein (38aa)
50S ribosomal protein L28 n=5 Tax=Clostridium RepID=G7LYF4_9CLOT
rpmB; 50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
L2_031_000G1_scaffold_9_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(511..1146)
DNA (636bp) protein (212aa)
Thiamine diphosphokinase {ECO:0000313|EMBL:EEP53081.1}; EC=2.7.6.2 {ECO:0000313|EMBL:EEP53081.1};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
Thiamine pyrophosphokinase n=4 Tax=Clostridium butyricum RepID=B1R2W4_CLOBU
thiamine pyrophosphokinase
L2_031_000G1_scaffold_9_3
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1151..1795)
DNA (645bp) protein (215aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
rpe; ribulose-phosphate 3-epimerase Rpe (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=4 Tax=Clostridium butyricum RepID=B1R2W5_CLOBU
L2_031_000G1_scaffold_9_4
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1789..2661)
DNA (873bp) protein (291aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
rsgA; putative ribosome biogenesis GTPase RsgA (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=2 Tax=Clostridium butyricum RepID=M8JJ98_CLOBU
L2_031_000G1_scaffold_9_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2770..4782)
DNA (2013bp) protein (671aa)
UPI0003D615D5 related cluster n=1 Tax=unknown RepID=UPI0003D615D5
Serine/threonine protein kinase {ECO:0000313|EMBL:KHD13579.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
protein kinase
L2_031_000G1_scaffold_9_6
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4785..5504)
DNA (720bp) protein (240aa)
protein phosphatase PrpC (EC:3.1.3.16)
Protein phosphatase PrpC n=2 Tax=Clostridium butyricum RepID=M8KCR6_CLOBU
Protein serine/threonine phosphatase PrpC, regulation of stationary phase {ECO:0000313|EMBL:KJZ83016.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
L2_031_000G1_scaffold_9_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5506..6549)
DNA (1044bp) protein (348aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rlmN: dual-specificity RNA methyltransferase RlmN (EC:2.1.1.- 2.1.1.192)
Probable dual-specificity RNA methyltransferase RlmN n=4 Tax=Clostridium butyricum RepID=B1R2W9_CLOBU
L2_031_000G1_scaffold_9_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6564..7880)
DNA (1317bp) protein (439aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rsmB; ribosomal RNA small subunit methyltransferase B (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AHX8_CLOBU
L2_031_000G1_scaffold_9_9
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8087..9013)
DNA (927bp) protein (309aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
fmt; methionyl-tRNA formyltransferase Fmt (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JJA1_CLOBU
L2_031_000G1_scaffold_9_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9213..9653)
DNA (441bp) protein (147aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
Peptide deformylase n=4 Tax=Clostridium butyricum RepID=B1R2X2_CLOBU
def; peptide deformylase
L2_031_000G1_scaffold_9_11
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9666..11915)
DNA (2250bp) protein (750aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
priA; primosomal protein N' (EC:3.6.4.-)
UPI0003D6195C related cluster n=1 Tax=unknown RepID=UPI0003D6195C
L2_031_000G1_scaffold_9_12
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11951..13135)
DNA (1185bp) protein (395aa)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AT74_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ82951.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
L2_031_000G1_scaffold_9_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13137..13358)
DNA (222bp) protein (74aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega n=4 Tax=Clostridium butyricum RepID=B1R2X5_CLOBU
L2_031_000G1_scaffold_9_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13339..13977)
DNA (639bp) protein (213aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
gmk; guanylate kinase Gmk (EC:2.7.4.8)
Guanylate kinase n=4 Tax=Clostridium butyricum RepID=B1R2X6_CLOBU
L2_031_000G1_scaffold_9_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13977..14246)
DNA (270bp) protein (90aa)
UPF0296 protein CBY_0536 n=4 Tax=Clostridium butyricum RepID=B1R2X7_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KHD16786.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L2_031_000G1_scaffold_9_16
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14262..15164)
DNA (903bp) protein (301aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R2X8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ82969.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
L2_031_000G1_scaffold_9_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15420..16799)
DNA (1380bp) protein (460aa)
Inner membrane protein YicO n=4 Tax=Clostridium butyricum RepID=C4IJI4_CLOBU
Guanine permease {ECO:0000313|EMBL:KHD16788.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
permease family protein
L2_031_000G1_scaffold_9_18
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17214..18197)
DNA (984bp) protein (328aa)
L-asparaginase {ECO:0000313|EMBL:KJZ82968.1}; EC=3.5.1.1 {ECO:0000313|EMBL:KJZ82968.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
ansA; type II L-asparaginase (EC:3.5.1.1)
L-asparaginase n=2 Tax=Clostridium butyricum RepID=C4IJI5_CLOBU
L2_031_000G1_scaffold_9_19
unknown

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comp(18172..18282)
DNA (111bp) protein (37aa)

This feature has no annotations

L2_031_000G1_scaffold_9_20
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18425..18862)
DNA (438bp) protein (146aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8JJB2_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ83441.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
hypothetical protein
L2_031_000G1_scaffold_9_21
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19050..20543)
DNA (1494bp) protein (498aa)
UPI0003D5DC22 related cluster n=1 Tax=unknown RepID=UPI0003D5DC22
Polyferredoxin {ECO:0000313|EMBL:KJZ84578.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
spoIVA; stage IV sporulation protein A
L2_031_000G1_scaffold_9_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20786..21778)
DNA (993bp) protein (331aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=4 Tax=Clostridium butyricum RepID=B1QYI7_CLOBU
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
L2_031_000G1_scaffold_9_23
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21783..23099)
DNA (1317bp) protein (439aa)
GTPase Der n=4 Tax=Clostridium butyricum RepID=B1QYI8_CLOBU
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
der; GTPase Der
L2_031_000G1_scaffold_9_24
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23099..24439)
DNA (1341bp) protein (447aa)
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:KJZ84560.1}; EC=1.-.-.- {ECO:0000313|EMBL:KJZ84560.1};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
Fe-S oxidoreductase n=2 Tax=Clostridium butyricum RepID=M8JHZ1_CLOBU
NifB/MoaA family Fe-S oxidoreductase
L2_031_000G1_scaffold_9_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24671..24856)
DNA (186bp) protein (62aa)
Polyphosphate kinase {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191}; EC=2.7.4.1 {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
Polyphosphate kinase n=3 Tax=Clostridium butyricum RepID=B1QYQ9_CLOBU
L2_031_000G1_scaffold_9_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25038..25700)
DNA (663bp) protein (221aa)
Phosphate-specific transport system accessory protein PhoU n=4 Tax=Clostridium butyricum RepID=B1QYR1_CLOBU
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
phosphate uptake regulator PhoU
L2_031_000G1_scaffold_9_27
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25722..26471)
DNA (750bp) protein (250aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
pstB1; phosphate import ATP-binding protein PstB (EC:3.6.3.27)
Phosphate ABC transporter, ATP-binding protein n=2 Tax=Clostridium butyricum RepID=M8K4L2_CLOBU
L2_031_000G1_scaffold_9_28
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26481..27365)
DNA (885bp) protein (295aa)
Phosphate ABC transporter, permease protein PstA n=4 Tax=Clostridium butyricum RepID=B1QYR3_CLOBU
Phosphate transport system permease protein PstA {ECO:0000313|EMBL:KJZ82994.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
yqgI; ABC transporter permease protein YqgI
L2_031_000G1_scaffold_9_29
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27365..28255)
DNA (891bp) protein (297aa)
Phosphate ABC transporter, permease protein PstC n=2 Tax=Clostridium butyricum RepID=M8JJC2_CLOBU
Phosphate transport system permease protein PstC {ECO:0000313|EMBL:KJZ82992.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
phosphate ABC transporter, inner membrane subunit PstC
L2_031_000G1_scaffold_9_30
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28372..29304)
DNA (933bp) protein (311aa)
Phosphate binding protein n=2 Tax=Clostridium butyricum RepID=M8J8Z5_CLOBU
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS {ECO:0000313|EMBL:KJZ82991.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
pstS; phosphate-binding protein PstS 1
Displaying items 1-30 of 209 in total

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