ggKbase home page

L2_031_000G1_scaffold_239

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_031_000G1_scaffold_239_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..97
DNA (96bp) protein (32aa)
Elongation factor Tu n=5 Tax=Clostridium butyricum RepID=B1QUE9_CLOBU
tuf2; elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
L2_031_000G1_scaffold_239_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


746..1054
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=11 Tax=Clostridium RepID=RS10_CLOB8
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
L2_031_000G1_scaffold_239_3
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1128..1757
DNA (630bp) protein (210aa)
50S ribosomal protein L3 n=2 Tax=Clostridium butyricum RepID=M8J644_CLOBU
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
rplC; 50S ribosomal protein L3
L2_031_000G1_scaffold_239_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1783..2403
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=4 Tax=Clostridium butyricum RepID=B1QYH0_CLOBU
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
rplD; 50S ribosomal protein L4
L2_031_000G1_scaffold_239_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2403..2699
DNA (297bp) protein (99aa)
50S ribosomal protein L23 n=4 Tax=Clostridium butyricum RepID=B1QYG9_CLOBU
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rplW; 50S ribosomal protein L23
L2_031_000G1_scaffold_239_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2764..3594
DNA (831bp) protein (277aa)
50S ribosomal protein L2 n=4 Tax=Clostridium butyricum RepID=B1QYG8_CLOBU
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
rplB; 50S ribosomal protein L2
L2_031_000G1_scaffold_239_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3657..3929
DNA (273bp) protein (91aa)
30S ribosomal protein S19 n=4 Tax=Clostridium butyricum RepID=B1QYG7_CLOBU
30S ribosomal protein S19 {ECO:0000313|EMBL:KHD14883.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
rpsS; 30S ribosomal protein S19
L2_031_000G1_scaffold_239_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3951..4286
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=4 Tax=Clostridium butyricum RepID=B1QYG6_CLOBU
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rplV; 50S ribosomal protein L22
L2_031_000G1_scaffold_239_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


4310..4978
DNA (669bp) protein (223aa)
30S ribosomal protein S3 n=4 Tax=Clostridium butyricum RepID=B1QYG5_CLOBU
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
rpsC; 30S ribosomal protein S3
L2_031_000G1_scaffold_239_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


4996..5430
DNA (435bp) protein (145aa)
50S ribosomal protein L16 n=4 Tax=Clostridium butyricum RepID=B1QYG4_CLOBU
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rplP; 50S ribosomal protein L16
L2_031_000G1_scaffold_239_11
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5430..5642
DNA (213bp) protein (71aa)
50S ribosomal protein L29 n=4 Tax=Clostridium butyricum RepID=B1QYG3_CLOBU
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
50S ribosomal protein L29
L2_031_000G1_scaffold_239_12
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5666..5920
DNA (255bp) protein (85aa)
30S ribosomal protein S17 n=4 Tax=Clostridium butyricum RepID=B1QYG2_CLOBU
rpsQ; 30S ribosomal protein S17
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
L2_031_000G1_scaffold_239_13
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5948..6316
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=5 Tax=Clostridium RepID=U5MKC8_CLOSA
hypothetical protein
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
L2_031_000G1_scaffold_239_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6332..6646
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=4 Tax=Clostridium butyricum RepID=B1QYG0_CLOBU
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
rplX; 50S ribosomal protein L24
L2_031_000G1_scaffold_239_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6669..7208
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=4 Tax=Clostridium butyricum RepID=B1QYF9_CLOBU
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rplE; 50S ribosomal protein L5
L2_031_000G1_scaffold_239_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7225..7410
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=5 Tax=Clostridium RepID=U5MP94_CLOSA
rpsZ; 30S ribosomal protein S14 type Z
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
L2_031_000G1_scaffold_239_17
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7443..7841
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=3 Tax=Clostridium butyricum RepID=B1QYF7_CLOBU
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
rpsH; 30S ribosomal protein S8
L2_031_000G1_scaffold_239_18
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7912..8454
DNA (543bp) protein (181aa)
50S ribosomal protein L6 n=4 Tax=Clostridium butyricum RepID=B1QYF6_CLOBU
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
rplF; 50S ribosomal protein L6
L2_031_000G1_scaffold_239_19
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8474..8833
DNA (360bp) protein (120aa)
50S ribosomal protein L18 n=4 Tax=Clostridium butyricum RepID=B1QYF5_CLOBU
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
rplR; 50S ribosomal protein L18
L2_031_000G1_scaffold_239_20
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8853..9350
DNA (498bp) protein (166aa)
30S ribosomal protein S5 n=4 Tax=Clostridium butyricum RepID=B1QYF4_CLOBU
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
rpsE; 30S ribosomal protein S5
L2_031_000G1_scaffold_239_21
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9364..9543
DNA (180bp) protein (60aa)
50S ribosomal protein L30 n=4 Tax=Clostridium butyricum RepID=B1QYF3_CLOBU
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
rpmD; 50S ribosomal protein L30
L2_031_000G1_scaffold_239_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9565..10005
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=4 Tax=Clostridium butyricum RepID=B1QYF2_CLOBU
50S ribosomal protein L15 {ECO:0000313|EMBL:KHD14868.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
rplO; 50S ribosomal protein L15
L2_031_000G1_scaffold_239_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


10007..11293
DNA (1287bp) protein (429aa)
Protein translocase subunit SecY n=2 Tax=Clostridium butyricum RepID=M8J622_CLOBU
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
secY; protein translocase subunit SecY
L2_031_000G1_scaffold_239_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11319..11966
DNA (648bp) protein (216aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
adk; adenylate kinase Adk (EC:2.7.4.3)
Adenylate kinase n=4 Tax=Clostridium butyricum RepID=B1QYF0_CLOBU
L2_031_000G1_scaffold_239_25
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11966..12715
DNA (750bp) protein (250aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
map1; methionine aminopeptidase Map (EC:3.4.11.18)
Methionine aminopeptidase n=3 Tax=Clostridium butyricum RepID=B1QYE9_CLOBU
L2_031_000G1_scaffold_239_26
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13092..13310
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=14 Tax=Clostridium RepID=IF1_CLOB8
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
L2_031_000G1_scaffold_239_27
Bacillus sp. BH072, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

13365..13478
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=87 Tax=Firmicutes RepID=RL36_BACA2
rpmJ; 50S ribosomal protein L36
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1570330 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. BH072.;"
L2_031_000G1_scaffold_239_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13677..14045
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=4 Tax=Clostridium butyricum RepID=B1QYE5_CLOBU
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rpsM; 30S ribosomal protein S13
L2_031_000G1_scaffold_239_29
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14061..14456
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=5 Tax=Clostridium RepID=U5MNL6_CLOSA
rpsK; 30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
L2_031_000G1_scaffold_239_30
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14484..15104
DNA (621bp) protein (207aa)
30S ribosomal protein S4 n=4 Tax=Clostridium butyricum RepID=B1QYE3_CLOBU
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rpsD; 30S ribosomal protein S4
Displaying items 1-30 of 61 in total

View Taxonomy