ggKbase home page

L2_031_000G1_scaffold_334

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_031_000G1_scaffold_334_1
unknown

Not on your lists

3..77
DNA (75bp) protein (25aa)

This feature has no annotations

L2_031_000G1_scaffold_334_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

288..1658
DNA (1371bp) protein (457aa)
Sugar transporter, glycoside-pentoside-hexuronide (GPH):cation symporter family n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RRD3_CLOPF
sodium:glactoside symporter family protein
Sugar transporter, glycoside-pentoside-hexuronide (GPH):cation symporter family {ECO:0000313|EMBL:EDT16447.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L2_031_000G1_scaffold_334_3
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1860..2549)
DNA (690bp) protein (230aa)
GntR family transcriptional regulator n=1 Tax=Clostridium beijerinckii RepID=UPI0002E75B13
Transcriptional regulator {ECO:0000313|EMBL:EKQ56522.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
GntR family transcriptional regulator
L2_031_000G1_scaffold_334_4
Enterococcus moraviensis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

2840..4111
DNA (1272bp) protein (424aa)
PTS system, lactose/cellobiose family IIC component (EC:2.7.1.69)
PTS system, cellobiose-specific IIC component n=1 Tax=Enterococcus moraviensis ATCC BAA-383 RepID=R2SW38_9ENTE
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=1158609 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus moraviensis ATCC BAA-383.;"
L2_031_000G1_scaffold_334_5
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4235..4759)
DNA (525bp) protein (175aa)
Helix-turn-helix domain protein n=3 Tax=Clostridium butyricum RepID=B1QY33_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ86654.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
helix-turn-helix domain protein
L2_031_000G1_scaffold_334_6
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4982..5476
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MTE5_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF59388.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L2_031_000G1_scaffold_334_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5903..7261
DNA (1359bp) protein (453aa)
scrA; PTS system sucrose-specific EIIBC component ScrA (EC:2.7.1.69)
Pts system, sucrose-specific iibc component n=4 Tax=Clostridium butyricum RepID=C4IN24_CLOBU
Pts system, sucrose-specific iibc component {ECO:0000313|EMBL:ETI91915.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
L2_031_000G1_scaffold_334_8
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7462..8451
DNA (990bp) protein (330aa)
Sucrose repressor n=2 Tax=Clostridium botulinum B RepID=B2TR64_CLOBB
sucrose repressor
Sucrose operon repressor ScrR, LacI family {ECO:0000313|EMBL:CDH92349.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L2_031_000G1_scaffold_334_9
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8479..9933
DNA (1455bp) protein (485aa)
Beta-fructofuranosidase {ECO:0000313|EMBL:AJH01952.1}; EC=3.2.1.26 {ECO:0000313|EMBL:AJH01952.1};; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
sacA2; sucrose-6-phosphate hydrolase SacA (EC:3.2.1.26)
Sucrose-6-phosphate hydrolase SacA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MXP6_CLOSA
L2_031_000G1_scaffold_334_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9923..10870
DNA (948bp) protein (316aa)
Fructokinase n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UZN3_CLOBO
Fructokinase {ECO:0000313|EMBL:EES47729.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
fructokinase
L2_031_000G1_scaffold_334_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11103..12377
DNA (1275bp) protein (425aa)
Integral membrane protein with CBS domain n=3 Tax=Clostridium butyricum RepID=B1QY46_CLOBU
Hemolysin {ECO:0000313|EMBL:KHD14921.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L2_031_000G1_scaffold_334_12
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12507..12965
DNA (459bp) protein (153aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
tRNA-specific adenosine deaminase TadA n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5N0A2_CLOSA
tadA; tRNA-specific adenosine deaminase TadA
L2_031_000G1_scaffold_334_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13064..14665)
DNA (1602bp) protein (534aa)
Na/Pi-cotransporter family protein/PhoU family protein n=2 Tax=Clostridium butyricum RepID=M8JEW7_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30504.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
Na/Pi-cotransporter family protein/PhoU family protein
L2_031_000G1_scaffold_334_14
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15189..16475
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NW79_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM99736.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L2_031_000G1_scaffold_334_15
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16481..16921
DNA (441bp) protein (147aa)
ABC transporter n=1 Tax=Clostridium intestinale URNW RepID=U2NN64_9CLOT
ABC transporter {ECO:0000313|EMBL:ERK30603.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
ABC transporter related protein
L2_031_000G1_scaffold_334_16
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17757..18248)
DNA (492bp) protein (164aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
diacylglycerol kinase n=1 Tax=Clostridium beijerinckii RepID=UPI000317F58F
dihydrofolate reductase
L2_031_000G1_scaffold_334_17
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18515..19357)
DNA (843bp) protein (281aa)
Thymidylate synthase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HHA0_9CLOT
Thymidylate synthase {ECO:0000313|EMBL:EEH99752.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
thymidylate synthase
L2_031_000G1_scaffold_334_18
Clostridium sporogenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19580..20728)
DNA (1149bp) protein (383aa)
Putative methyl-accepting chemotaxis protein n=1 Tax=Clostridium sporogenes PA 3679 RepID=G9F219_CLOSG
methyl-accepting chemotaxis protein
Putative methyl-accepting chemotaxis protein {ECO:0000313|EMBL:EHN14697.1}; TaxID=1075091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sporogenes PA 3679.;"
L2_031_000G1_scaffold_334_19
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20765..22771)
DNA (2007bp) protein (669aa)
Flavin oxidoreductase/NADH oxidase n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LGB3_THEPS
Uncharacterized protein {ECO:0000313|EMBL:KGK86736.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
nadH2; flavin oxidoreductase/NADH oxidase
L2_031_000G1_scaffold_334_20
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22971..24602)
DNA (1632bp) protein (544aa)
Putative transcriptional regulator, PucR family n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A0Y4_NATTJ
Uncharacterized protein {ECO:0000313|EMBL:KGK86735.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
putative PucR family transcriptional regulator
L2_031_000G1_scaffold_334_21
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25080..26723
DNA (1644bp) protein (548aa)
dnaX; DNA polymerase III subunit gamma/tau (EC:2.7.7.7)
DNA polymerase III subunit gamma/tau {ECO:0000313|EMBL:AGX45349.1}; EC=2.7.7.7 {ECO:0000313|EMBL:AGX45349.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
DNA polymerase III subunit gamma/tau n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MX26_CLOSA
L2_031_000G1_scaffold_334_22
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26814..27152
DNA (339bp) protein (113aa)
Nucleoid-associated protein Cspa_c56220 n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1M194_9CLOT
DNA-binding protein, YbaB/EbfC family
Nucleoid-associated protein Cspa_c56220 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L2_031_000G1_scaffold_334_23
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27288..27887
DNA (600bp) protein (200aa)
Recombination protein RecR n=1 Tax=Clostridium sp. DL-VIII RepID=G7M7L9_9CLOT
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
recR; recombination protein RecR
L2_031_000G1_scaffold_334_24
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28053..28388
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6M374_CLOB8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJH02074.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
L2_031_000G1_scaffold_334_25
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28414..28683
DNA (270bp) protein (90aa)
Sigma-K factor processing regulatory protein BofA n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JD93_CLOBU
Inhibitor of pro-sigmaK processing BofA {ECO:0000313|EMBL:KJZ88916.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
sigma-K factor processing regulatory protein BofA
L2_031_000G1_scaffold_334_26
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28832..29977
DNA (1146bp) protein (382aa)
Ligand-binding protein SH3 n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FYQ5_CLOPA
Ligand-binding protein SH3 {ECO:0000313|EMBL:ETD68976.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
SH3 type 3 domain-containing protein
L2_031_000G1_scaffold_334_27
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30092..30262
DNA (171bp) protein (57aa)
Alpha/beta hydrolase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FXJ5_CLOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR37050.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L2_031_000G1_scaffold_334_28
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31237..32154
DNA (918bp) protein (306aa)
Oligopeptide transport system permease protein OppB n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JII3_CLOBU
Oligopeptide transport system permease protein OppB {ECO:0000313|EMBL:ETI90856.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
oligopeptide transport system permease OppB
L2_031_000G1_scaffold_334_29
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32168..33109
DNA (942bp) protein (314aa)
Oligopeptide transport system permease protein OppC n=2 Tax=Clostridium butyricum RepID=B1QXL0_CLOBU
Oligopeptide transport system permease protein OppC {ECO:0000313|EMBL:EEP55030.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
oppC; oligopeptide transport system permease protein OppC
L2_031_000G1_scaffold_334_30
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33124..34131
DNA (1008bp) protein (336aa)
Oligopeptide transport ATP-binding protein OppD n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V5B2_CLOBA
oligopeptide transport ATP-binding protein OppD
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIL06728.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
Displaying items 1-30 of 41 in total

View Taxonomy