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L2_031_000G1_scaffold_359

Search features with annotation key words

Displaying items 1-30 of 95 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_031_000G1_scaffold_359_1
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(391..864)
DNA (474bp) protein (158aa)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9W793_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ57945.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L2_031_000G1_scaffold_359_2
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(861..1988)
DNA (1128bp) protein (376aa)
Ribose ABC transporter permease n=10 Tax=Clostridium RepID=N9WIV3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB61515.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
permease component of ribose/xylose/arabinose/galactoside ABC-type transporters
L2_031_000G1_scaffold_359_3
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1985..3064)
DNA (1080bp) protein (360aa)
Ribose ABC transporter permease n=9 Tax=Clostridium RepID=N9UY88_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF25937.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
monosaccharide ABC transporter membrane protein, CUT2 family
L2_031_000G1_scaffold_359_4
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3078..4667)
DNA (1590bp) protein (530aa)
Ribose ABC transporter ATP-binding protein n=8 Tax=Clostridium RepID=N9UYT7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF25938.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
monosaccharide ABC transporter ATP-binding protein, CUT2 family
L2_031_000G1_scaffold_359_5
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4747..6060)
DNA (1314bp) protein (438aa)
Uncharacterized protein n=8 Tax=Clostridium RepID=N9WIA6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ57949.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L2_031_000G1_scaffold_359_6
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6228..7751)
DNA (1524bp) protein (508aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Integral membrane sensor signal transduction histidine kinase n=9 Tax=Clostridium RepID=N9W787_9CLOT
integral membrane sensor signal transduction histidine kinase
L2_031_000G1_scaffold_359_7
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7748..8428)
DNA (681bp) protein (227aa)
Two-component system response regulator n=10 Tax=Clostridium RepID=N9WIU7_9CLOT
Two-component system response regulator {ECO:0000313|EMBL:ENZ08863.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
winged helix family two component transcriptional regulator
L2_031_000G1_scaffold_359_8
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8638..8961)
DNA (324bp) protein (108aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9UY83_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ08864.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Protein of unknown function (DUF1292).
L2_031_000G1_scaffold_359_9
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9069..9611)
DNA (543bp) protein (181aa)
Cob(I)yrinic acid a,c-diamide adenosyltransferase n=9 Tax=Clostridium RepID=N9UYT0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF25943.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
L2_031_000G1_scaffold_359_10
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9608..11434)
DNA (1827bp) protein (609aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
UvrD/REP helicase n=6 Tax=Clostridium clostridioforme RepID=N9WIA2_9CLOT
UvrD/REP helicase
L2_031_000G1_scaffold_359_11
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11446..12897)
DNA (1452bp) protein (484aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase n=9 Tax=Clostridium RepID=G5I7I3_9CLOT
L2_031_000G1_scaffold_359_12
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13007..13558)
DNA (552bp) protein (184aa)
Uncharacterized protein n=8 Tax=Clostridium RepID=N9WIU2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ57956.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
L2_031_000G1_scaffold_359_13
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13651..15774)
DNA (2124bp) protein (708aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=9 Tax=Clostridium RepID=G5I7I1_9CLOT
L2_031_000G1_scaffold_359_14
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16009..16275)
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=19 Tax=Clostridiales RepID=A8RZ95_9CLOT
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
SSU ribosomal protein S15P
L2_031_000G1_scaffold_359_15
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16272..16451)
DNA (180bp) protein (60aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9WI97_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ57959.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
L2_031_000G1_scaffold_359_16
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16453..17403)
DNA (951bp) protein (317aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Riboflavin biosynthesis protein RibF n=9 Tax=Clostridium RepID=G5I7H8_9CLOT
riboflavin biosynthesis protein RibF
L2_031_000G1_scaffold_359_17
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17462..18388)
DNA (927bp) protein (309aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
tRNA pseudouridine synthase B (EC:4.2.1.70 5.4.99.12)
tRNA pseudouridine synthase B n=9 Tax=Clostridium RepID=G5I7H7_9CLOT
L2_031_000G1_scaffold_359_18
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18399..19367)
DNA (969bp) protein (323aa)
Phosphoesterase RecJ protein n=6 Tax=Clostridium RepID=N9UY73_9CLOT
Phosphoesterase RecJ protein {ECO:0000313|EMBL:ENZ08874.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Exopolyphosphatase-related proteins
L2_031_000G1_scaffold_359_19
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19367..19768)
DNA (402bp) protein (134aa)
Ribosome-binding factor A n=17 Tax=Clostridium RepID=A8RZ90_9CLOT
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
ribosome-binding factor A
L2_031_000G1_scaffold_359_20
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19794..23114)
DNA (3321bp) protein (1107aa)
Translation initiation factor IF-2 n=1 Tax=Clostridium clostridioforme 90B1 RepID=N9WPT4_9CLOT
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
translation initiation factor IF-2
L2_031_000G1_scaffold_359_21
unknown

Not on your lists

comp(23101..23220)
DNA (120bp) protein (40aa)

This feature has no annotations

L2_031_000G1_scaffold_359_22
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23210..23482)
DNA (273bp) protein (91aa)
Uncharacterized protein n=15 Tax=Clostridium RepID=N9WIT1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB62208.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
hypothetical protein
L2_031_000G1_scaffold_359_23
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23517..24683)
DNA (1167bp) protein (389aa)
Transcription termination factor NusA n=9 Tax=Clostridium RepID=G5I7H1_9CLOT
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
transcription termination factor NusA
L2_031_000G1_scaffold_359_24
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24725..25192)
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP n=9 Tax=Clostridium RepID=G5I7H0_9CLOT
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L2_031_000G1_scaffold_359_25
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25369..26508)
DNA (1140bp) protein (380aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=9 Tax=Clostridium RepID=G5I7G9_9CLOT
L2_031_000G1_scaffold_359_26
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26792..28027)
DNA (1236bp) protein (412aa)
[FeFe] hydrogenase H-cluster maturation GTPase HydF n=9 Tax=Clostridium RepID=N9W765_9CLOT
[FeFe] hydrogenase H-cluster maturation GTPase HydF {ECO:0000313|EMBL:ENZ08750.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
iron-only hydrogenase maturation protein HydF
L2_031_000G1_scaffold_359_27
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28052..29473)
DNA (1422bp) protein (474aa)
[FeFe] hydrogenase H-cluster radical SAM maturase HydG n=9 Tax=Clostridium RepID=N9WIS6_9CLOT
[FeFe] hydrogenase H-cluster radical SAM maturase HydG {ECO:0000313|EMBL:ENZ57840.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
iron-only hydrogenase maturation protein HydG
L2_031_000G1_scaffold_359_28
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29848..30789)
DNA (942bp) protein (314aa)
Sugar ABC transporter permease n=9 Tax=Clostridium RepID=N9UYR1_9CLOT
Sugar ABC transporter permease {ECO:0000313|EMBL:ENZ08753.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
inner-membrane translocator
L2_031_000G1_scaffold_359_29
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30783..31811)
DNA (1029bp) protein (343aa)
Sugar ABC transporter permease n=8 Tax=Clostridium RepID=N9WI85_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23737.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
inner-membrane translocator
L2_031_000G1_scaffold_359_30
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31804..33333)
DNA (1530bp) protein (510aa)
Sugar ABC transporter ATP-binding protein n=7 Tax=Clostridium clostridioforme RepID=N9W760_9CLOT
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:ENZ57845.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
ABC transporter
Displaying items 1-30 of 95 in total

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