ggKbase home page

L2_031_000G1_scaffold_377

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_031_000G1_scaffold_377_1
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(497..3022)
DNA (2526bp) protein (842aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
DNA gyrase subunit A n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EUP4_9CLOT
DNA gyrase subunit A
L2_031_000G1_scaffold_377_2
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3044..4951)
DNA (1908bp) protein (636aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
gyrB; DNA gyrase, B subunit (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Clostridium colicanis 209318 RepID=N9WBE3_9CLOT
L2_031_000G1_scaffold_377_3
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5005..5265)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WB14_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ00176.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
hypothetical protein
L2_031_000G1_scaffold_377_4
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5280..6380)
DNA (1101bp) protein (367aa)
DNA replication and repair protein recF n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H926_9CLOT
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
recF; DNA replication and repair RecF family protein
L2_031_000G1_scaffold_377_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6439..6651)
DNA (213bp) protein (71aa)
S4 domain protein YaaA n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UW13_CLOBO
S4 domain protein YaaA {ECO:0000313|EMBL:EES50591.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
yaaA; S4 domain-containing protein YaaA
L2_031_000G1_scaffold_377_6
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6682..7782)
DNA (1101bp) protein (367aa)
dnaN; DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
DNA polymerase III subunit beta n=1 Tax=Clostridium colicanis 209318 RepID=N9XW95_9CLOT
L2_031_000G1_scaffold_377_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8041..9396)
DNA (1356bp) protein (452aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Clostridium sp. DL-VIII RepID=G7MBL2_9CLOT
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
dnaA; chromosomal replication initiator protein DnaA
L2_031_000G1_scaffold_377_8
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9930..10064
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EI53_CLOPA
ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
L2_031_000G1_scaffold_377_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10125..10511
DNA (387bp) protein (129aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rnpA; ribonuclease P protein component RnpA (EC:3.1.26.5)
Ribonuclease P protein component n=4 Tax=Clostridium butyricum RepID=B1QSN0_CLOBU
L2_031_000G1_scaffold_377_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10474..10683
DNA (210bp) protein (70aa)
membrane protein insertion efficiency factor n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=UPI0003B78AB1
putative membrane protein insertion efficiency factor
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_031_000G1_scaffold_377_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10713..11501
DNA (789bp) protein (263aa)
Membrane protein OxaA n=2 Tax=Clostridium butyricum RepID=B1QSN2_CLOBU
Membrane protein OxaA {ECO:0000313|EMBL:ETI91999.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
yidC; membrane insertase, YidC/Oxa1 family domain protein
L2_031_000G1_scaffold_377_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11533..12162
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H5A0_9CLOT
putative RNA-binding protein
Putative RNA-binding protein {ECO:0000313|EMBL:AIY82669.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_031_000G1_scaffold_377_13
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12474..13853
DNA (1380bp) protein (460aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
tRNA modification GTPase mnmE n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H4T9_9CLOT
trmE; tRNA modification GTPase TrmE
L2_031_000G1_scaffold_377_14
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13866..15749
DNA (1884bp) protein (628aa)
tRNA uridine 5-carboxymethylaminomethyl modification protein n=1 Tax=Clostridium botulinum RepID=UPI0003141044
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
L2_031_000G1_scaffold_377_15
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15765..16484
DNA (720bp) protein (240aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
rsmG; ribosomal RNA small subunit methyltransferase G (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Clostridium colicanis 209318 RepID=N9XKJ4_9CLOT
L2_031_000G1_scaffold_377_16
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16619..17398
DNA (780bp) protein (260aa)
Putative ParB-like partition protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EUM8_9CLOT
noc; nucleoid occlusion protein
Nucleoid occlusion protein {ECO:0000313|EMBL:AIY82577.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_031_000G1_scaffold_377_17
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17531..18295
DNA (765bp) protein (255aa)
Putative ATPase involved in chromosome partitioning n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FQ66_9CLOT
Putative ATPase involved in chromosome partitioning {ECO:0000313|EMBL:CDG02934.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
soj; sporulation initiation inhibitor protein Soj
L2_031_000G1_scaffold_377_18
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18309..19151
DNA (843bp) protein (281aa)
ParB-like partition protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YRR6_CLOBU
spo0J; stage 0 sporulation protein J
Stage 0 sporulation protein J {ECO:0000313|EMBL:AIY83400.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_031_000G1_scaffold_377_19
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19191..19706
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MY11_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX45465.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_031_000G1_scaffold_377_20
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19734..20324)
DNA (591bp) protein (197aa)
Putative sporulation protein YyaC n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MXG5_CLOSA
yyaC3; putative sporulation protein YyaC
Putative sporulation protein YyaC {ECO:0000313|EMBL:AGX45464.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_031_000G1_scaffold_377_21
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20379..21524)
DNA (1146bp) protein (382aa)
cysteine desulfurase n=1 Tax=Clostridium botulinum RepID=UPI0003713960
cysteine desulfurase
Cysteine desulfurase {ECO:0000313|EMBL:KIL08341.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L2_031_000G1_scaffold_377_22
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21675..21914
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1M1P5_9CLOT
hypothetical protein DUF3343
Uncharacterized protein {ECO:0000313|EMBL:AGF59545.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L2_031_000G1_scaffold_377_23
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21926..22813
DNA (888bp) protein (296aa)
Mechanosensitive ion channel family protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V1T9_CLOBA
mechanosensitive ion channel family protein
Mechanosensitive ion channel protein {ECO:0000313|EMBL:KIL08338.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L2_031_000G1_scaffold_377_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22813..23007
DNA (195bp) protein (65aa)
UPI0003D679CE related cluster n=1 Tax=unknown RepID=UPI0003D679CE
Uncharacterized protein {ECO:0000313|EMBL:ETI91985.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
hypothetical protein
L2_031_000G1_scaffold_377_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23106..23393
DNA (288bp) protein (96aa)
30S ribosomal protein S6 n=4 Tax=Clostridium butyricum RepID=B1QSP7_CLOBU
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
rpsF; 30S ribosomal protein S6
L2_031_000G1_scaffold_377_26
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23408..23866
DNA (459bp) protein (153aa)
Single-stranded DNA-binding protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FQ57_9CLOT
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
ssb; single-stranded DNA-binding family protein
L2_031_000G1_scaffold_377_27
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23893..24138
DNA (246bp) protein (82aa)
30S ribosomal protein S18 n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QPJ5_9CLOT
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
rpsR; ribosomal protein S18
L2_031_000G1_scaffold_377_28
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24318..24650
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=2 Tax=Clostridium botulinum E RepID=B2V1T4_CLOBA
hypothetical protein
MazG-like family protein {ECO:0000313|EMBL:KIL08333.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L2_031_000G1_scaffold_377_29
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24666..26609
DNA (1944bp) protein (648aa)
DHH family protein n=2 Tax=Clostridium botulinum B RepID=B2TRG3_CLOBB
DHH family protein {ECO:0000313|EMBL:AIY81665.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
DHH family protein
L2_031_000G1_scaffold_377_30
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


26611..27057
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FRF8_CLOPA
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
rplI; 50S ribosomal protein L9
Displaying items 1-30 of 39 in total

View Taxonomy