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L2_031_000G1_scaffold_400

Search features with annotation key words

Displaying items 1-30 of 170 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_031_000G1_scaffold_400_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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85..294
DNA (210bp) protein (70aa)
AAA-like domain protein n=2 Tax=Clostridium difficile RepID=T3FBT4_CLODI
AAA-like domain protein {ECO:0000313|EMBL:EQJ63166.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
putative hydrolase Tn1549-like, CTn4-Orf9
L2_031_000G1_scaffold_400_2
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

291..1250
DNA (960bp) protein (320aa)
DNA modification methylase (EC:2.1.1.72)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
DNA modification methylase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M5W3_9FIRM
L2_031_000G1_scaffold_400_3
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1277..3181
DNA (1905bp) protein (635aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=T3E6R7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CBL26624.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
hypothetical protein
L2_031_000G1_scaffold_400_4
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3213..3482
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P61 RepID=T4S9G1_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEU96272.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L2_031_000G1_scaffold_400_5
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3472..4200
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H723_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU96273.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
putative cell surface proteinTn1549-like,CTn4-Orf13
L2_031_000G1_scaffold_400_6
unknown

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4264..4407
DNA (144bp) protein (48aa)

This feature has no annotations

L2_031_000G1_scaffold_400_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4478..5101
DNA (624bp) protein (208aa)
VanZ like family protein n=3 Tax=root RepID=U4B851_CLODI
VanZ-like protein {ECO:0000313|EMBL:EEU96275.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Glycopeptide antibiotics resistance protein
L2_031_000G1_scaffold_400_8
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

5219..7309
DNA (2091bp) protein (697aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
topB; DNA topoisomerase III; Tn1549-like, CTn4-Orf15 (EC:5.99.1.2)
DNA topoisomerase III n=1 Tax=Clostridium difficile RepID=UPI00017F5FB4
L2_031_000G1_scaffold_400_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7440..11453
DNA (4014bp) protein (1338aa)
Putative antirestriction protein Tn1549-like,CTn4-Orf16 n=1 Tax=Clostridium difficile E28 RepID=U4B6Z4_CLODI
putative antirestriction proteinTn1549-like,CTn4-Orf16
Domain of uncharacterised function (DUF955)./Antirestriction protein (ArdA) {ECO:0000313|EMBL:CKG93809.1}; Putative antirestriction proteinTn1549-like,CTn4-Orf16 {ECO:0000313|EMBL:CEJ97671.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_031_000G1_scaffold_400_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11456..11662
DNA (207bp) protein (69aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf17 n=3 Tax=Clostridium difficile RepID=U3W7I6_CLODI
putative conjugative transposon proteinTn1549-like, CTn4-Orf17
Putative conjugative transposon protein Tn1549-like, CTn4-Orf17 {ECO:0000313|EMBL:CAJ67952.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_031_000G1_scaffold_400_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11659..12024
DNA (366bp) protein (122aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf18 n=1 Tax=Clostridium difficile (strain 630) RepID=Q18AW4_CLOD6
putative conjugative transposon proteinTn1549-like, CTn4-Orf18
Putative conjugative transposon proteinTn1549-like, CTn4-Orf18 {ECO:0000313|EMBL:CEJ97669.1}; Uncharacterised protein {ECO:0000313|EMBL:CKG93755.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_031_000G1_scaffold_400_12
unknown

Not on your lists

comp(12099..12284)
DNA (186bp) protein (62aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=U3W7L6_CLODI
L2_031_000G1_scaffold_400_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12300..12620)
DNA (321bp) protein (107aa)
Putative conjugative transposon protein n=1 Tax=Clostridium difficile P38 RepID=T4PU28_CLODI
putative conjugative transposon proteinTn1549-like, CTn4-Orf19
Putative conjugative transposon protein Tn1549-like, CTn4-Orf19 {ECO:0000313|EMBL:CAJ67950.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_031_000G1_scaffold_400_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12889..12999)
DNA (111bp) protein (37aa)
Putative membrane protein n=1 Tax=Clostridium difficile P28 RepID=T4P6D4_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EQJ63157.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L2_031_000G1_scaffold_400_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13004..13234)
DNA (231bp) protein (77aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf21 n=2 Tax=Clostridium difficile RepID=Q18AV6_CLOD6
putative conjugative transposon proteinTn1549-like, CTn4-Orf21
Putative conjugative transposon protein Tn1549-like, CTn4-Orf21 {ECO:0000313|EMBL:CAJ67948.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_031_000G1_scaffold_400_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13327..14676)
DNA (1350bp) protein (450aa)
Putative endonuclease relaxase Tn1549-like,CTn4-Orf22 n=2 Tax=Clostridium difficile RepID=U3W6D3_CLODI
endonuclease relaxase
Putative endonuclease relaxaseTn1549-like,CTn4-Orf22 {ECO:0000313|EMBL:CEJ97665.1}; Relaxase/Mobilisation nuclease domain {ECO:0000313|EMBL:CKG93675.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_031_000G1_scaffold_400_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14637..14966)
DNA (330bp) protein (110aa)
mobilization protein n=1 Tax=Clostridium difficile RepID=UPI00017F5BAF
putative mobilization proteinTn1549-like,CTn4-Orf23
Bacterial mobilisation protein (MobC) {ECO:0000313|EMBL:CKG93649.1}; Putative mobilization proteinTn1549-like,CTn4-Orf23 {ECO:0000313|EMBL:CEJ97664.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_031_000G1_scaffold_400_18
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15215..15568)
DNA (354bp) protein (118aa)
Transcriptional regulator, HTH-type Tn1549-like, CTn4-Orf24 n=2 Tax=Clostridium difficile RepID=U4AC98_CLODI
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEU96287.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Transcriptional regulator, HTH-typeTn1549-like,CTn4-Orf24
L2_031_000G1_scaffold_400_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15730..15918
DNA (189bp) protein (63aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf25 n=9 Tax=Clostridium difficile RepID=Q18AV2_CLOD6
conjugative transposon protein
Putative conjugative transposon proteinTn1549-like, CTn4-Orf25 {ECO:0000313|EMBL:CEJ97662.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_031_000G1_scaffold_400_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15911..16603
DNA (693bp) protein (231aa)
Transcriptional regulatory family protein n=2 Tax=Clostridium difficile RepID=T2TGI6_CLODI
two-component response regulator
Two-component response regulator,Tn1549-like,CTn4-Orf26 {ECO:0000313|EMBL:CAJ67943.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_031_000G1_scaffold_400_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16610..17527
DNA (918bp) protein (306aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Two-component sensor histidine kinase,Tn1549-like, CTn4-Orf27 n=16 Tax=Clostridium difficile RepID=Q18AU8_CLOD6
two-component sensor histidine kinase
L2_031_000G1_scaffold_400_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17664..18590
DNA (927bp) protein (309aa)
multidrug family ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC-type transport system, multidrug-familyATP-binding protein Tn1549-like, CTn4-Orf28 {ECO:0000313|EMBL:CEJ97659.1}; EC=3.6.3.- {ECO:0000313|EMBL:CEJ97659.1};; Lantibiotic ABC transporter ATP-binding protein {ECO:0000313|EMBL:CKG93555.1}; EC=3.6.3.- {ECO:0000313|EMBL:CKG93555.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter family protein n=8 Tax=Clostridium difficile RepID=T3ES46_CLODI
L2_031_000G1_scaffold_400_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18583..19392
DNA (810bp) protein (270aa)
lantibiotic ABC transporter permease n=1 Tax=Clostridium difficile RepID=UPI00036FFE4A
ABC-type transport system, multidrug-familypermease Tn1549-like, CTn4-Orf29
ABC-type transport system, multidrug-family permease Tn1549-like, CTn4-Orf29 {ECO:0000313|EMBL:CAJ67940.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_031_000G1_scaffold_400_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19398..20171
DNA (774bp) protein (258aa)
ABC-type transport system, multidrug-family permease Tn1549-like, CTn4-Orf30 n=10 Tax=root RepID=U4A9W8_CLODI
ABC-type transport system, multidrug-familypermease Tn1549-like, CTn4-Orf30
ABC-type transport system, multidrug-family permease Tn1549-like, CTn4-Orf30 {ECO:0000313|EMBL:CAJ67939.2}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_031_000G1_scaffold_400_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20233..20409
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Clostridium difficile RepID=UPI00035DEAA7
Uncharacterized protein {ECO:0000313|EMBL:EDN78855.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L2_031_000G1_scaffold_400_26
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20468..20725
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Clostridium difficile E28 RepID=U4B458_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL34430.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_031_000G1_scaffold_400_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21268..21708
DNA (441bp) protein (147aa)
RNA polymerase sigma factor, sigma-70 family protein n=9 Tax=root RepID=T3ECZ2_CLODI
putative RNA polymerase sigma factorTn1549-like,CTn4-Orf31
Putative RNA polymerase sigma factorTn1549-like,CTn4-Orf31 {ECO:0000313|EMBL:CEJ97656.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_031_000G1_scaffold_400_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21689..21946
DNA (258bp) protein (86aa)
Putative conjugative transposon protein Tn1549-like, CTn4-Orf32 n=2 Tax=Clostridium difficile RepID=Q18AU6_CLOD6
putative conjugative transposon proteinTn1549-like, CTn4-Orf32
Helix-turn-helix domain {ECO:0000313|EMBL:CKG93488.1}; Putative conjugative transposon proteinTn1549-like, CTn4-Orf32 {ECO:0000313|EMBL:CEJ97655.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_031_000G1_scaffold_400_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22367..22570
DNA (204bp) protein (68aa)
Excisionase Tn1549-like, CTn4-Orf33 n=9 Tax=Clostridiales RepID=Q18AU7_CLOD6
xis; excisionase
Excisionase Tn1549-like, CTn4-Orf33 {ECO:0000313|EMBL:CEJ97654.1}; Excisionase from transposon Tn916 {ECO:0000313|EMBL:CKG93453.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_031_000G1_scaffold_400_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22590..23663
DNA (1074bp) protein (358aa)
Integrase Tn1549-like, CTn4-Orf34 n=1 Tax=Clostridium difficile E28 RepID=U4BAX2_CLODI
int; integrase
Integrase Tn1549-like, CTn4-Orf34 {ECO:0000313|EMBL:CAJ67935.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Displaying items 1-30 of 170 in total

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