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L2_031_000G1_scaffold_579

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_031_000G1_scaffold_579_1
unknown

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comp(3..68)
DNA (66bp) protein (22aa)

This feature has no annotations

L2_031_000G1_scaffold_579_2
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(200..1309)
DNA (1110bp) protein (370aa)
BRCT domain protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6FVK4_9CLOT
BRCT domain protein {ECO:0000313|EMBL:CDB16110.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
hypothetical protein
L2_031_000G1_scaffold_579_3
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1311..1730)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6G3Q4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB16109.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
L2_031_000G1_scaffold_579_4
Enterococcus dispar, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(1910..2887)
DNA (978bp) protein (326aa)
Tagatose 1,6-diphosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00734}; EC=4.1.2.40 {ECO:0000256|HAMAP-Rule:MF_00734};; D-tagatose-1,6-bisphosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00734}; Tagatose-bisphosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00734}; TaxID=1139219 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus dispar ATCC 51266.;"
tagatose 1,6-diphosphate aldolase (EC:4.1.2.40)
Tagatose 1,6-diphosphate aldolase 2 n=1 Tax=Enterococcus dispar ATCC 51266 RepID=S0KNQ2_9ENTE
L2_031_000G1_scaffold_579_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2940..3455)
DNA (516bp) protein (172aa)
lacB; galactose-6-phosphate isomerase subunit LacB (EC:5.3.1.26)
Galactose-6-phosphate isomerase subunit LacB {ECO:0000255|HAMAP-Rule:MF_01556}; EC=5.3.1.26 {ECO:0000255|HAMAP-Rule:MF_01556};; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
Galactose-6-phosphate isomerase subunit LacB n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=LACB_CLOPE
L2_031_000G1_scaffold_579_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3477..3905)
DNA (429bp) protein (143aa)
lacA; galactose-6-phosphate isomerase subunit LacA (EC:5.3.1.26)
Galactose-6-phosphate isomerase subunit LacA {ECO:0000255|HAMAP-Rule:MF_01555}; EC=5.3.1.26 {ECO:0000255|HAMAP-Rule:MF_01555};; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
Galactose-6-phosphate isomerase subunit LacA n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=LACA_CLOPE
L2_031_000G1_scaffold_579_7
Streptococcus mitis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(3920..6166)
DNA (2247bp) protein (749aa)
Glycosyl hydrolase family 98 family protein n=1 Tax=Streptococcus mitis SK597 RepID=E1LUY5_STRMT
Glycosyl hydrolase family 98 family protein {ECO:0000313|EMBL:EFN99714.1}; TaxID=585204 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus mitis SK597.;"
putative exported glycosyl hydrolase
L2_031_000G1_scaffold_579_8
Streptococcus pneumoniae, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(6204..8510)
DNA (2307bp) protein (769aa)
Uncharacterized protein n=2 Tax=Streptococcus suis RepID=B9WT57_STRSU
hypothetical protein
Large secreted protein {ECO:0000313|EMBL:CRF95758.1}; TaxID=1313 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus pneumoniae.;"
L2_031_000G1_scaffold_579_9
Streptococcus mitis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(8559..9368)
DNA (810bp) protein (270aa)
Mannose-specific phosphotransferase system (PTS), IID component n=1 Tax=Streptococcus suis D9 RepID=G7S7K5_STRSU
PTS system mannose/fructose/sorbose IID component family protein {ECO:0000313|EMBL:KEQ43813.1}; TaxID=28037 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus mitis.;"
manN; mannose-specific phosphotransferase system (PTS), IID component
L2_031_000G1_scaffold_579_10
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(9365..10150)
DNA (786bp) protein (262aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WHY8_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX71563.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
PTS sorbose-specific transporter subunit IIC
L2_031_000G1_scaffold_579_11
Streptococcus mitis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(10186..10656)
DNA (471bp) protein (157aa)
PTS system mannose-specific EIIAB component {ECO:0000313|EMBL:EFN99717.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EFN99717.1};; TaxID=585204 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus mitis SK597.;"
PTS system sorbose subfamily IIB component n=2 Tax=Streptococcus suis RepID=G7S7K7_STRSU
PTS system sorbose subfamily transporter subunit IIB
L2_031_000G1_scaffold_579_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10647..11084)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XNL3_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB80026.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_031_000G1_scaffold_579_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11093..11746)
DNA (654bp) protein (218aa)
fucA; L-fuculose phosphate aldolase (EC:4.1.2.17)
L-fuculose-phosphate aldolase n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XNL4_CLOPE
L-fuculose-phosphate aldolase {ECO:0000313|EMBL:BAB80025.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_031_000G1_scaffold_579_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11782..13569)
DNA (1788bp) protein (596aa)
fucI; L-fucose isomerase (EC:5.3.1.25)
L-fucose isomerase {ECO:0000255|HAMAP-Rule:MF_01254}; EC=5.3.1.25 {ECO:0000255|HAMAP-Rule:MF_01254};; 6-deoxy-L-galactose isomerase {ECO:0000255|HAMAP-Rule:MF_01254}; FucIase; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L-fucose isomerase n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=FUCI_CLOPE
L2_031_000G1_scaffold_579_15
Streptococcus mitis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(13594..14019)
DNA (426bp) protein (142aa)
High affinity ribose transport protein rbsD n=1 Tax=Streptococcus mitis SK597 RepID=E1LUY9_STRMT
High affinity ribose transport protein rbsD {ECO:0000313|EMBL:EFN99718.1}; TaxID=585204 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus mitis SK597.;"
ribose ABC transporter membrane protein
L2_031_000G1_scaffold_579_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14033..15436)
DNA (1404bp) protein (468aa)
Rhamnulokinase n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XNL6_CLOPE
fucK; rhamnulokinase
Rhamnulokinase {ECO:0000313|EMBL:BAB80023.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_031_000G1_scaffold_579_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15620..16402
DNA (783bp) protein (261aa)
Probable transcriptional regulator n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XNL7_CLOPE
transcriptional regulator
Probable transcriptional regulator {ECO:0000313|EMBL:BAB80022.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L2_031_000G1_scaffold_579_18
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16474..17001)
DNA (528bp) protein (176aa)
Riboflavin biosynthesis protein RibD C-domain protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8J3X8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ88729.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
dihydrofolate reductase family protein
L2_031_000G1_scaffold_579_19
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17274..17864
DNA (591bp) protein (197aa)
Sigma-70 region 2 domain protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2UWH0_CLOBA
RNA polymerase sigma 70 {ECO:0000313|EMBL:KIL07513.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
sigma-70 region 2 domain-containing protein
L2_031_000G1_scaffold_579_20
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(17980..18735)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7G5G6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW06467.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
hypothetical protein
L2_031_000G1_scaffold_579_21
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(18827..19675)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7G5G4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW06465.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
transcriptional activator ramA
L2_031_000G1_scaffold_579_22
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(19705..21171)
DNA (1467bp) protein (489aa)
arbB2; 6-phospho-beta-glucosidase (EC:3.2.1.86)
6-phospho-beta-glucosidase n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GG91_9FIRM
6-phospho-beta-glucosidase {ECO:0000313|EMBL:EFW02995.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
L2_031_000G1_scaffold_579_23
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(21184..21918)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Coprobacillus sp. D6 RepID=UPI0002F3B9FB
Uncharacterized protein {ECO:0000313|EMBL:EFW02994.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
putative esterase
L2_031_000G1_scaffold_579_24
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(21920..23221)
DNA (1302bp) protein (434aa)
PTS system, lactose/cellobiose IIC component family protein (EC:2.7.1.69)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7GG89_9FIRM
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
L2_031_000G1_scaffold_579_25
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(23358..24248)
DNA (891bp) protein (297aa)
Transcriptional regulator n=2 Tax=Paenibacillus polymyxa RepID=E3E7I5_PAEPS
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ADO56790.1}; TaxID=886882 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus polymyxa (strain SC2) (Bacillus polymyxa).;"
L2_031_000G1_scaffold_579_26
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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comp(24718..25119)
DNA (402bp) protein (134aa)
Pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PP18_9CLOT
Pyridoxamine 5'-phosphate oxidase family protein {ECO:0000313|EMBL:CDC48099.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
hypothetical protein
L2_031_000G1_scaffold_579_27
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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25224..25592
DNA (369bp) protein (123aa)
Transcriptional regulator HxlR family n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RYH8_9FIRM
Transcriptional regulator HxlR family {ECO:0000313|EMBL:CDC48096.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
transcriptional regulator, MarR family
L2_031_000G1_scaffold_579_28
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26018..26455
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=2 Tax=Clostridium botulinum E RepID=B2V3J9_CLOBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EES49741.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
L2_031_000G1_scaffold_579_29
unknown

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26586..26762
DNA (177bp) protein (59aa)

This feature has no annotations

Displaying 29 items

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