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L2_031_000G1_scaffold_1104

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_031_000G1_scaffold_1104_1
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

441..977
DNA (537bp) protein (179aa)
Uncharacterized protein n=9 Tax=Firmicutes RepID=B9Y9E8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67999.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L2_031_000G1_scaffold_1104_2
unknown

Not on your lists

2524..2646
DNA (123bp) protein (41aa)

This feature has no annotations

L2_031_000G1_scaffold_1104_3
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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2767..4509
DNA (1743bp) protein (581aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UBT7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC68217.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
Site-specific recombinases, DNA invertase Pin homologs
L2_031_000G1_scaffold_1104_4
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4972..5928)
DNA (957bp) protein (319aa)
Uncharacterized protein n=6 Tax=Clostridium clostridioforme RepID=N9W011_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ66283.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
AraC-type DNA-binding domain-containing proteins
L2_031_000G1_scaffold_1104_5
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6087..7283
DNA (1197bp) protein (399aa)
Major facilitator superfamily transporter n=7 Tax=Clostridium clostridioforme RepID=N9W0H5_9CLOT
Major facilitator superfamily transporter {ECO:0000313|EMBL:ENZ12275.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
major facilitator superfamily protein
L2_031_000G1_scaffold_1104_6
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7240..8208
DNA (969bp) protein (323aa)
PHP protein n=6 Tax=Clostridium clostridioforme RepID=N9WSK8_9CLOT
PHP protein {ECO:0000313|EMBL:ENZ66285.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
Predicted metal-dependent phosphoesterases (PHP family)
L2_031_000G1_scaffold_1104_7
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8324..9343
DNA (1020bp) protein (340aa)
NupC family nucleoside transporter n=6 Tax=Clostridium clostridioforme RepID=N9WT40_9CLOT
NupC family nucleoside transporter {ECO:0000313|EMBL:ENZ66286.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
nucleoside permease nupC
L2_031_000G1_scaffold_1104_8
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9356..10543
DNA (1188bp) protein (396aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
phosphopentomutase (EC:5.4.2.7)
Phosphopentomutase n=9 Tax=Clostridium RepID=G5I063_9CLOT
L2_031_000G1_scaffold_1104_9
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10615..11250
DNA (636bp) protein (212aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase n=8 Tax=Clostridium RepID=G5I064_9CLOT
L2_031_000G1_scaffold_1104_10
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11715..12467
DNA (753bp) protein (251aa)
NAD-dependent protein deacetylases, SIR2 family (EC:3.5.1.-)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9W0H0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23395.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
L2_031_000G1_scaffold_1104_11
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12565..13143
DNA (579bp) protein (193aa)
ErfK/YbiS/YcfS/YnhG family protein n=8 Tax=Clostridium RepID=N9WSK3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23394.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
ErfK/YbiS/YcfS/YnhG family protein
L2_031_000G1_scaffold_1104_12
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13354..13617
DNA (264bp) protein (88aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9WT33_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23393.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
hypothetical protein
L2_031_000G1_scaffold_1104_13
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13790..15124
DNA (1335bp) protein (445aa)
Uncharacterized protein n=8 Tax=Clostridium clostridioforme RepID=N9XL04_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ66292.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
L2_031_000G1_scaffold_1104_14
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15279..16736)
DNA (1458bp) protein (486aa)
Solute:sodium symporter (SSS) family transporter n=9 Tax=Clostridium RepID=N9W003_9CLOT
Solute:sodium symporter (SSS) family transporter {ECO:0000313|EMBL:ENZ12284.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Na+/solute symporter
L2_031_000G1_scaffold_1104_15
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16776..17483
DNA (708bp) protein (236aa)
Two-component system response regulator n=6 Tax=Clostridium clostridioforme RepID=N9W0G7_9CLOT
Two-component system response regulator {ECO:0000313|EMBL:ENZ66294.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
LytTR family two component transcriptional regulator
L2_031_000G1_scaffold_1104_16
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17491..18795
DNA (1305bp) protein (435aa)
Two-component system sensor histidine kinase n=6 Tax=Clostridium clostridioforme RepID=N9WSJ8_9CLOT
Two-component system sensor histidine kinase {ECO:0000313|EMBL:ENZ66295.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
signal transduction histidine kinase regulating citrate/malate metabolism
L2_031_000G1_scaffold_1104_17
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18961..19752
DNA (792bp) protein (264aa)
Phosphomethylpyrimidine kinase n=10 Tax=Clostridium RepID=G5I072_9CLOT
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:ENZ12287.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
phosphomethylpyrimidine kinase
L2_031_000G1_scaffold_1104_18
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19765..20988
DNA (1224bp) protein (408aa)
Hydroxymethylpyrimidine transporter CytX n=7 Tax=Clostridium RepID=N9XL00_9CLOT
Hydroxymethylpyrimidine transporter CytX {ECO:0000313|EMBL:ENZ66297.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
probable hydroxymethylpyrimidine transporter CytX
L2_031_000G1_scaffold_1104_19
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21140..21853
DNA (714bp) protein (238aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Peptidyl-prolyl cis-trans isomerase n=7 Tax=Clostridium clostridioforme RepID=N9W000_9CLOT
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family
L2_031_000G1_scaffold_1104_20
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22086..23495
DNA (1410bp) protein (470aa)
ErfK/YbiS/YcfS/YnhG family protein n=9 Tax=Clostridium RepID=N9W0G2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23385.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
ErfK/YbiS/YcfS/YnhG family protein
L2_031_000G1_scaffold_1104_21
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23647..25026
DNA (1380bp) protein (460aa)
MATE efflux family protein n=10 Tax=Clostridium RepID=N9WSJ2_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:ENZ12291.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
putative efflux protein, MATE family
L2_031_000G1_scaffold_1104_22
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25067..25183
DNA (117bp) protein (39aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9WT18_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ66301.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
L2_031_000G1_scaffold_1104_23
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25135..26370)
DNA (1236bp) protein (412aa)
SARP family transcriptional regulator n=8 Tax=Clostridium clostridioforme RepID=N9XKZ7_9CLOT
SARP family transcriptional regulator {ECO:0000313|EMBL:ENZ12293.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
SARP family transcriptional regulator
L2_031_000G1_scaffold_1104_24
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26567..27427
DNA (861bp) protein (287aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9VZZ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ12294.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
L2_031_000G1_scaffold_1104_25
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27454..28371
DNA (918bp) protein (306aa)
SrtB family sortase n=9 Tax=Clostridium RepID=G5I080_9CLOT
SrtB family sortase {ECO:0000313|EMBL:ENZ12295.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
sortase
L2_031_000G1_scaffold_1104_26
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28385..28570
DNA (186bp) protein (62aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9WSI7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ12296.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L2_031_000G1_scaffold_1104_27
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28682..29626
DNA (945bp) protein (315aa)
ABC transporter periplasmic protein n=10 Tax=Clostridium RepID=N9WT12_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB63807.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
family 3 extracellular solute-binding protein
L2_031_000G1_scaffold_1104_28
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29722..30525
DNA (804bp) protein (268aa)
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region n=10 Tax=Clostridium RepID=N9XKZ3_9CLOT
His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region {ECO:0000313|EMBL:ENZ12298.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
polar amino acid ABC transporter inner membrane subunit
L2_031_000G1_scaffold_1104_29
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30522..31265
DNA (744bp) protein (248aa)
Polar amino acid ABC transporter ATP-binding protein n=8 Tax=Clostridium RepID=N9VZZ2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23376.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
ABC transporter
L2_031_000G1_scaffold_1104_30
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31360..31524)
DNA (165bp) protein (55aa)
Uncharacterized protein n=10 Tax=Clostridium RepID=N9W0F7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ66309.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
hypothetical protein
Displaying items 1-30 of 31 in total

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