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L2_031_000G1_scaffold_1310

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_031_000G1_scaffold_1310_1
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

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1116..1784
DNA (669bp) protein (223aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R6E990_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA97098.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
L2_031_000G1_scaffold_1310_2
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

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1798..2013
DNA (216bp) protein (72aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R6EII5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA97099.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
Transcriptional regulator, Cro/CI family protein
L2_031_000G1_scaffold_1310_3
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2965..3966
DNA (1002bp) protein (334aa)
Transcriptional regulators n=1 Tax=Ruminococcus torques L2-14 RepID=D4M0P3_9FIRM
Transcriptional regulators
Transcriptional regulators {ECO:0000313|EMBL:CBL27603.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_031_000G1_scaffold_1310_4
Proteobacteria bacterium CAG:139, Proteobacteria, Bacteria

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4214..5110
DNA (897bp) protein (299aa)
Transposase IS4 family n=1 Tax=Proteobacteria bacterium CAG:139 RepID=R6AVG3_9PROT
Transposase IS4 family {ECO:0000313|EMBL:CDA45102.1}; TaxID=1262986 species="Bacteria; Proteobacteria; environmental samples.;" source="Proteobacteria bacterium CAG:139.;"
transposase
L2_031_000G1_scaffold_1310_5
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5149..5628
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2BBJ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI69178.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
transposase
L2_031_000G1_scaffold_1310_6
Lactobacillus delbrueckii, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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5597..5809
DNA (213bp) protein (71aa)
Uncharacterized protein n=3 Tax=Lactobacillus RepID=K0NIJ5_9LACO
Uncharacterized protein {ECO:0000313|EMBL:EPB99358.1}; TaxID=1269760 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus delbrueckii subsp. lactis CRL581.;"
L2_031_000G1_scaffold_1310_7
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6028..6894
DNA (867bp) protein (289aa)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Ruminococcus torques L2-14 RepID=D4M0P4_9FIRM
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL27604.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_031_000G1_scaffold_1310_8
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6894..7718
DNA (825bp) protein (275aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Ruminococcus torques L2-14 RepID=D4M0P5_9FIRM
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL27605.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_031_000G1_scaffold_1310_9
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7740..9440
DNA (1701bp) protein (567aa)
Glycosidases {ECO:0000313|EMBL:CBL27606.1}; EC=3.2.1.10 {ECO:0000313|EMBL:CBL27606.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Glycosidases (EC:3.2.1.10)
Glycosidases n=1 Tax=Ruminococcus torques L2-14 RepID=D4M0P6_9FIRM
L2_031_000G1_scaffold_1310_10
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9462..10763
DNA (1302bp) protein (434aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Ruminococcus torques L2-14 RepID=D4M0P7_9FIRM
ABC-type sugar transport system, periplasmic component
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:CBL27607.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_031_000G1_scaffold_1310_11
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10809..12242
DNA (1434bp) protein (478aa)
Beta-fructosidases (levanase/invertase) (EC:3.2.1.65)
Beta-fructosidases (Levanase/invertase) {ECO:0000313|EMBL:CBL27608.1}; EC=3.2.1.65 {ECO:0000313|EMBL:CBL27608.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Beta-fructosidases (Levanase/invertase) n=1 Tax=Ruminococcus torques L2-14 RepID=D4M0P8_9FIRM
L2_031_000G1_scaffold_1310_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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12358..12696
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FT47_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80793.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_031_000G1_scaffold_1310_13
Streptococcus equinus, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(12872..13204)
DNA (333bp) protein (111aa)
Two-component system, OmpR family, KDP operon response regulator n=1 Tax=Streptococcus pasteurianus (strain ATCC 43144 / JCM 5346 / CDC 1723-81) RepID=F5X5V8_STRPX
kdpE; OmpR family two component system KDP operon response regulator
Response regulator receiver domain protein {ECO:0000313|EMBL:EFM27730.1}; TaxID=864569 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus equinus ATCC 700338.;"
L2_031_000G1_scaffold_1310_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13399..13773
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67735.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L2_031_000G1_scaffold_1310_15
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13912..14472
DNA (561bp) protein (187aa)
Sigma-70 family RNA polymerase sigma factor n=2 Tax=Clostridiales RepID=N2A1N3_9CLOT
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EMZ19910.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
RNA polymerase sigma-G factor
L2_031_000G1_scaffold_1310_16
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15080..15934)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67738.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
AraC-type DNA-binding domain-containing proteins
L2_031_000G1_scaffold_1310_17
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16199..17560
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TWP7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67739.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
sugar (Glycoside-Pentoside-Hexuronide) transporter
L2_031_000G1_scaffold_1310_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17562..18998
DNA (1437bp) protein (479aa)
alpha-L-fucosidase (EC:3.2.1.51)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPZ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67740.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L2_031_000G1_scaffold_1310_19
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19074..20975
DNA (1902bp) protein (634aa)
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.23)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WVQ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX69369.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
L2_031_000G1_scaffold_1310_20
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20959..21906
DNA (948bp) protein (316aa)
Beta-galactosidase {ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|SAAS:SAAS00046613};; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Beta galactosidase small chain. (EC:3.2.1.23)
Beta galactosidase small subunit n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WVQ4_9FIRM
L2_031_000G1_scaffold_1310_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22159..22959
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UAS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68276.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
transcriptional regulator, AraC family
L2_031_000G1_scaffold_1310_22
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23136..23624
DNA (489bp) protein (163aa)
Predicted DNA-binding proteins n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UHI0_9FIRM
Predicted DNA-binding proteins {ECO:0000313|EMBL:CCZ68277.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted DNA-binding proteins
L2_031_000G1_scaffold_1310_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23869..24690
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TR58_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN46563.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
conserved hypothetical protein TIGR02677
Displaying 23 items

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