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L2_031_000G1_scaffold_1339

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_031_000G1_scaffold_1339_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(50..1216)
DNA (1167bp) protein (389aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1BDN3_9FIRM
D-alanyl-D-alanine carboxypeptidase family protein {ECO:0000313|EMBL:EQJ58137.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
D-alanyl-D-alanine carboxypeptidase
L2_031_000G1_scaffold_1339_2
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1620..1985)
DNA (366bp) protein (122aa)
50S ribosomal protein L17 n=8 Tax=Firmicutes RepID=E2SNN2_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
LSU ribosomal protein L17P
L2_031_000G1_scaffold_1339_3
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(2013..2972)
DNA (960bp) protein (320aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
DNA-directed RNA polymerase subunit alpha n=5 Tax=Firmicutes RepID=E4LNT5_9CLOT
rpoA; DNA-directed RNA polymerase subunit alpha
L2_031_000G1_scaffold_1339_4
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3001..3399)
DNA (399bp) protein (133aa)
30S ribosomal protein S11 n=6 Tax=Firmicutes RepID=E4LNT6_9CLOT
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
30S ribosomal protein S11
L2_031_000G1_scaffold_1339_5
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(3421..3786)
DNA (366bp) protein (122aa)
30S ribosomal protein S13 n=8 Tax=Firmicutes RepID=E2SNM9_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
30S ribosomal protein S13
L2_031_000G1_scaffold_1339_6
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(3943..4161)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=7 Tax=Firmicutes RepID=E2SNM7_9FIRM
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
infA; translation initiation factor IF-1
L2_031_000G1_scaffold_1339_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4154..4927)
DNA (774bp) protein (258aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Methionine aminopeptidase n=7 Tax=Firmicutes RepID=E4LNT9_9CLOT
methionine aminopeptidase
L2_031_000G1_scaffold_1339_8
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(4930..5577)
DNA (648bp) protein (216aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
Adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=7 Tax=Firmicutes RepID=E4LNU0_9CLOT
L2_031_000G1_scaffold_1339_9
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(5597..6901)
DNA (1305bp) protein (435aa)
Protein translocase subunit SecY n=5 Tax=Firmicutes RepID=E4LNU1_9CLOT
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
protein translocase subunit secY/sec61 alpha
L2_031_000G1_scaffold_1339_10
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(6904..7344)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=5 Tax=Erysipelotrichaceae RepID=E2SNM3_9FIRM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
rplO; 50S ribosomal protein L15
L2_031_000G1_scaffold_1339_11
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(7360..7872)
DNA (513bp) protein (171aa)
30S ribosomal protein S5 n=8 Tax=Firmicutes RepID=E2SNM2_9FIRM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
SSU ribosomal protein S5P
L2_031_000G1_scaffold_1339_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(7885..8241)
DNA (357bp) protein (119aa)
50S ribosomal protein L18 n=8 Tax=Firmicutes RepID=E2SNM1_9FIRM
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
LSU ribosomal protein L18P
L2_031_000G1_scaffold_1339_13
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8263..8808)
DNA (546bp) protein (182aa)
50S ribosomal protein L6 n=7 Tax=Firmicutes RepID=E4LNU5_9CLOT
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
LSU ribosomal protein L6P
L2_031_000G1_scaffold_1339_14
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(8830..9225)
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=7 Tax=Firmicutes RepID=E4LNU6_9CLOT
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
SSU ribosomal protein S8P
L2_031_000G1_scaffold_1339_15
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(9247..9432)
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=6 Tax=Erysipelotrichaceae RepID=E2SNL8_9FIRM
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
SSU ribosomal protein S14P
L2_031_000G1_scaffold_1339_16
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(9449..9988)
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=7 Tax=Firmicutes RepID=E4LNU7_9CLOT
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
LSU ribosomal protein L5P
L2_031_000G1_scaffold_1339_17
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(10001..10324)
DNA (324bp) protein (108aa)
50S ribosomal protein L24 n=6 Tax=Erysipelotrichaceae RepID=E2SNL6_9FIRM
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
rplX; 50S ribosomal protein L24
L2_031_000G1_scaffold_1339_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10337..10705)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=10 Tax=Firmicutes RepID=E2SNL5_9FIRM
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
LSU ribosomal protein L14P
L2_031_000G1_scaffold_1339_19
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10723..10983)
DNA (261bp) protein (87aa)
30S ribosomal protein S17 n=8 Tax=Firmicutes RepID=E2SNL4_9FIRM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
SSU ribosomal protein S17P
L2_031_000G1_scaffold_1339_20
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11000..11200)
DNA (201bp) protein (67aa)
50S ribosomal protein L29 n=6 Tax=Firmicutes RepID=E4LNV1_9CLOT
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
LSU ribosomal protein L29P
L2_031_000G1_scaffold_1339_21
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(11203..11619)
DNA (417bp) protein (139aa)
50S ribosomal protein L16 n=8 Tax=Firmicutes RepID=E2SNL2_9FIRM
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
LSU ribosomal protein L16P
L2_031_000G1_scaffold_1339_22
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(11623..12414)
DNA (792bp) protein (264aa)
30S ribosomal protein S3 n=6 Tax=Firmicutes RepID=E2SNL1_9FIRM
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
rpsC; 30S ribosomal protein S3
L2_031_000G1_scaffold_1339_23
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(12426..12761)
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=8 Tax=Firmicutes RepID=E2SNL0_9FIRM
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
LSU ribosomal protein L22P
L2_031_000G1_scaffold_1339_24
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12777..13055)
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=7 Tax=Firmicutes RepID=E4LNV5_9CLOT
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
SSU ribosomal protein S19P
L2_031_000G1_scaffold_1339_25
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(13075..13284)
DNA (210bp) protein (70aa)
50S ribosomal protein L2 n=4 Tax=Firmicutes RepID=E2SNK9_9FIRM
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
LSU ribosomal protein L2P
Displaying 25 items

View Taxonomy