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L2_031_030G1_scaffold_12

Search features with annotation key words

Displaying items 1-30 of 242 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_031_030G1_scaffold_12_1
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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575..1075
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TMP8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49805.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
L2_031_030G1_scaffold_12_2
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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1015..1464
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RC80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC42924.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
L2_031_030G1_scaffold_12_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1843..2304
DNA (462bp) protein (154aa)
Transcriptional regulator, MarR family n=2 Tax=Clostridiales RepID=A7AZ92_RUMGN
Transcriptional regulator MarR family {ECO:0000313|EMBL:CCZ66403.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
transcriptional regulator, MarR family
L2_031_030G1_scaffold_12_4
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2301..3692
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UBR8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66402.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
MATE efflux family protein
L2_031_030G1_scaffold_12_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3866..5401
DNA (1536bp) protein (512aa)
Polyphosphate:AMP phosphotransferase n=1 Tax=Ruminococcus gnavus CC55_001C RepID=V8BZF4_RUMGN
Polyphosphate:AMP phosphotransferase {ECO:0000313|EMBL:ETD20533.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L2_031_030G1_scaffold_12_6
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5484..7259
DNA (1776bp) protein (592aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U529_9FIRM
L2_031_030G1_scaffold_12_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7316..8431
DNA (1116bp) protein (372aa)
RNA polymerase sigma factor SigA n=4 Tax=Clostridiales RepID=A7AZ88_RUMGN
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
RNA polymerase, sigma 70 subunit, RpoD
L2_031_030G1_scaffold_12_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8435..9145
DNA (711bp) protein (237aa)
Uncharacterized protein n=4 Tax=Lachnospiraceae RepID=A7AZ87_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20530.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Predicted SAM-dependent methyltransferase
L2_031_030G1_scaffold_12_9
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9135..9917
DNA (783bp) protein (261aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKH4_9FIRM
conserved hypothetical protein TIGR00486
L2_031_030G1_scaffold_12_10
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9942..11612
DNA (1671bp) protein (557aa)
Uridine kinase (EC:2.7.1.48)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UB97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66227.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L2_031_030G1_scaffold_12_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11633..12505
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U523_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66226.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L2_031_030G1_scaffold_12_12
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12621..14507)
DNA (1887bp) protein (629aa)
ABC transporter solute-binding protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKJ6_9FIRM
ABC transporter solute-binding protein {ECO:0000313|EMBL:CCZ66225.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Spermidine/putrescine-binding periplasmic protein
L2_031_030G1_scaffold_12_13
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14504..15319)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TSI3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66224.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
binding-protein-dependent transport system inner membrane protein
L2_031_030G1_scaffold_12_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15309..16382)
DNA (1074bp) protein (358aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
spermidine/putrescine ABC transporter ATP-binding subunit (EC:3.6.3.31)
Polyamine ABC transporter ATP-binding protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKH0_9FIRM
L2_031_030G1_scaffold_12_15
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16375..17487)
DNA (1113bp) protein (371aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UB92_9FIRM
L2_031_030G1_scaffold_12_16
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17715..19259
DNA (1545bp) protein (515aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U518_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66221.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
peptidoglycan transpeptidase precursor, ErfK-YbiS-YhnG family
L2_031_030G1_scaffold_12_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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19297..20475
DNA (1179bp) protein (393aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=3 Tax=Clostridiales RepID=A7AZ77_RUMGN
L2_031_030G1_scaffold_12_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20614..20883
DNA (270bp) protein (90aa)
Preprotein translocase, YajC subunit n=4 Tax=Clostridiales RepID=A7AZ75_RUMGN
Preprotein translocase subunit {ECO:0000313|EMBL:CCZ66219.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
preprotein translocase, YajC subunit
L2_031_030G1_scaffold_12_19
unknown

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20904..21008
DNA (105bp) protein (35aa)

This feature has no annotations

L2_031_030G1_scaffold_12_20
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21066..22151
DNA (1086bp) protein (362aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=3 Tax=Lachnospiraceae RepID=A7AZ74_RUMGN
L2_031_030G1_scaffold_12_21
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22192..23865
DNA (1674bp) protein (558aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=2 Tax=Clostridiales RepID=A7AZ73_RUMGN
L2_031_030G1_scaffold_12_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23878..25557
DNA (1680bp) protein (560aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase n=4 Tax=Clostridiales RepID=A7AZ72_RUMGN
L2_031_030G1_scaffold_12_23
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25604..26686
DNA (1083bp) protein (361aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TKI8_9FIRM
L2_031_030G1_scaffold_12_24
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26688..27851
DNA (1164bp) protein (388aa)
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
4-phosphoerythronate dehydrogenase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TSH4_9FIRM
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:CCZ66214.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L2_031_030G1_scaffold_12_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28009..29397
DNA (1389bp) protein (463aa)
HMGL-like protein n=4 Tax=Clostridiales RepID=A7AZ69_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20514.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Isopropylmalate/homocitrate/citramalate synthases
L2_031_030G1_scaffold_12_26
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29420..30085
DNA (666bp) protein (222aa)
Transcriptional regulator, GntR family n=4 Tax=Clostridiales RepID=A7AZ68_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20513.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
transcriptional regulator, GntR family
L2_031_030G1_scaffold_12_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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30099..31295
DNA (1197bp) protein (399aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
isocitrate dehydrogenase, NADP-dependent, eukaryotic type (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] n=3 Tax=Clostridiales RepID=F7JSX8_9FIRM
L2_031_030G1_scaffold_12_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31497..31988
DNA (492bp) protein (164aa)
RNA polymerase sigma factor n=2 Tax=Lachnospiraceae RepID=F7JSX7_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ECF subfamily RNA polymerase sigma-24 subunit
L2_031_030G1_scaffold_12_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31981..32631
DNA (651bp) protein (217aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7AZ65_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20510.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L2_031_030G1_scaffold_12_30
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32664..34589)
DNA (1926bp) protein (642aa)
ABC transporter, ATP-binding protein n=3 Tax=Lachnospiraceae RepID=A7AZ64_RUMGN
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDN79069.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
ATPase components of ABC transporters with duplicated ATPase domains
Displaying items 1-30 of 242 in total

View Taxonomy