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L2_031_030G1_scaffold_142

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_031_030G1_scaffold_142_1
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1..216)
DNA (216bp) protein (72aa)
Methylthioribose kinase {ECO:0000256|HAMAP-Rule:MF_01683}; Short=MTR kinase {ECO:0000256|HAMAP-Rule:MF_01683};; EC=2.7.1.100 {ECO:0000256|HAMAP-Rule:MF_01683};; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
mtnK; methylthioribose kinase (EC:2.7.1.100)
Methylthioribose kinase n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VRL2_9FIRM
L2_031_030G1_scaffold_142_2
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(240..1571)
DNA (1332bp) protein (444aa)
Uncharacterized protein n=6 Tax=Firmicutes RepID=G1VRL1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENY87912.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
Na+/H+ antiporter NhaC-like protein
L2_031_030G1_scaffold_142_3
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

1907..2674
DNA (768bp) protein (256aa)
Uncharacterized protein n=6 Tax=Firmicutes RepID=G1VRL0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENY87913.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
DeoR family transcriptional regulator
L2_031_030G1_scaffold_142_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2693..3859
DNA (1167bp) protein (389aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=G1VRK9_9FIRM
Iron-containing alcohol dehydrogenase family protein {ECO:0000313|EMBL:EQJ54781.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
iron-containing alcohol dehydrogenase
L2_031_030G1_scaffold_142_5
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(4018..5748)
DNA (1731bp) protein (577aa)
lytC; Glycosyl hydrolases family 25,lysozyme (EC:3.2.1.17)
Uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=H1B071_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC87055.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L2_031_030G1_scaffold_142_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6004..6987)
DNA (984bp) protein (328aa)
Peptide chain release factor 2 n=4 Tax=Firmicutes RepID=H1B072_9FIRM
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
peptide chain release factor 2
L2_031_030G1_scaffold_142_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7104..9452)
DNA (2349bp) protein (783aa)
Protein translocase subunit SecA n=4 Tax=Firmicutes RepID=H1B073_9FIRM
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
secA; preprotein translocase subunit SecA
L2_031_030G1_scaffold_142_8
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9765..10520)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Clostridium sp. HGF2 RepID=E4M086_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR35588.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
bclA3; exosporium glycoprotein BclA3
L2_031_030G1_scaffold_142_9
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10917..11222
DNA (306bp) protein (102aa)
Transcriptional regulator, ArsR family n=2 Tax=Clostridiales RepID=A7B162_RUMGN
Transcriptional regulator ArsR family {ECO:0000313|EMBL:CCZ67166.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
arsR; arsenical resistance operon repressor
L2_031_030G1_scaffold_142_10
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11295..12308
DNA (1014bp) protein (338aa)
Putative permease family protein n=1 Tax=Clostridium difficile P38 RepID=T4Q3R1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EGG79338.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
Predicted permeases
L2_031_030G1_scaffold_142_11
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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12324..12659
DNA (336bp) protein (112aa)
Redox-active disulfide protein 2 n=2 Tax=Enterococcus faecalis RepID=E2YUY3_ENTFL
Redox-active disulfide protein 2 {ECO:0000313|EMBL:EFQ16576.1}; TaxID=749509 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0311.;"
small redox-active disulfide protein 2
L2_031_030G1_scaffold_142_12
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12664..13713
DNA (1050bp) protein (350aa)
Arsenical-resistance protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SDF6_9FIRM
Arsenical-resistance protein {ECO:0000313|EMBL:EDP20881.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
arsenical-resistance protein
L2_031_030G1_scaffold_142_13
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13700..14110
DNA (411bp) protein (137aa)
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TN31_9FIRM
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:CCZ67168.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
arsC; protein ArsC
L2_031_030G1_scaffold_142_14
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14516..15736
DNA (1221bp) protein (407aa)
Cro/Cl family transcriptional regulator n=1 Tax=Blautia producta RepID=UPI000363E9C4
Cro/CI family Transcriptional regulator {ECO:0000313|EMBL:EFV19379.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
helix-turn-helix protein
L2_031_030G1_scaffold_142_15
unknown

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16111..16416
DNA (306bp) protein (102aa)

This feature has no annotations

L2_031_030G1_scaffold_142_16
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16763..16963
DNA (201bp) protein (67aa)
Excisionase family DNA binding domain-containing protein n=1 Tax=Coprobacillus sp. D7 RepID=C3RQH8_9FIRM
Excisionase transposon {ECO:0000313|EMBL:EGX77800.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
excisionase family DNA binding domain-containing protein
L2_031_030G1_scaffold_142_17
Streptococcus equi, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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17045..18235
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. D7 RepID=C3RQH7_9FIRM
Contig000055, whole genome shotgun sequence {ECO:0000313|EMBL:KIS15392.1}; TaxID=1381082 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus equi subsp. zooepidemicus Sz4is.;"
site-specific recombinase, phage integrase family
L2_031_030G1_scaffold_142_18
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(18461..18640)
DNA (180bp) protein (60aa)
Cold-shock DNA-binding domain protein n=7 Tax=Firmicutes RepID=E4M087_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY87919.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
cold-shock DNA-binding domain-containing protein
L2_031_030G1_scaffold_142_19
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(18985..19182)
DNA (198bp) protein (66aa)
Cold-shock DNA-binding domain protein n=7 Tax=Firmicutes RepID=E4M088_9CLOT
Cold shock-like protein CspC {ECO:0000313|EMBL:EHO31118.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
cold-shock DNA-binding domain protein
L2_031_030G1_scaffold_142_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19210..19878)
DNA (669bp) protein (223aa)
ComF family protein n=2 Tax=Firmicutes RepID=H1B696_9FIRM
Phosphoribosyl transferase domain protein {ECO:0000313|EMBL:EQJ54774.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Predicted amidophosphoribosyltransferases
L2_031_030G1_scaffold_142_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19875..21029)
DNA (1155bp) protein (385aa)
Helicase conserved C-terminal domain protein n=1 Tax=Clostridium difficile P28 RepID=T4NBQ8_CLODI
Helicase conserved C-terminal domain protein {ECO:0000313|EMBL:EQJ54773.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)
L2_031_030G1_scaffold_142_22
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(21187..22197)
DNA (1011bp) protein (337aa)
UDP-galactose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=7 Tax=Firmicutes RepID=E4M091_9CLOT
UDP-glucose 4-epimerase {ECO:0000313|EMBL:ENY87951.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L2_031_030G1_scaffold_142_23
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(22455..23453)
DNA (999bp) protein (333aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=H1B080_9FIRM
Glucosamine-fructose-6-phosphate aminotransferase {ECO:0000313|EMBL:KGJ54808.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
Predicted phosphosugar isomerases
L2_031_030G1_scaffold_142_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23489..24319)
DNA (831bp) protein (277aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=H1B081_9FIRM
PTS system mannose/fructose/sorbose IID component family protein {ECO:0000313|EMBL:EQJ54770.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
PTS system mannose/fructose/sorbose family transporter subunit IID
L2_031_030G1_scaffold_142_25
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(24309..25079)
DNA (771bp) protein (257aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=H1B082_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC87044.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
PTS system sorbose-specific transporter subunit IIC
L2_031_030G1_scaffold_142_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25165..25641)
DNA (477bp) protein (159aa)
PTS system sorbose subfamily IIB component n=4 Tax=Firmicutes RepID=E4M095_9CLOT
PTS system sorbose subIIB component family protein {ECO:0000313|EMBL:EQJ54768.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
PTS system sorbose subfamily transporter subunit IIB
L2_031_030G1_scaffold_142_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25807..26226)
DNA (420bp) protein (140aa)
PTS system fructose IIA component n=5 Tax=Firmicutes RepID=E4M096_9CLOT
Putative PTS permease {ECO:0000313|EMBL:EQJ54767.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
PTS sugar transporter
L2_031_030G1_scaffold_142_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26240..27061)
DNA (822bp) protein (274aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=H1B085_9FIRM
Xylose isomerase-like TIM barrel family protein {ECO:0000313|EMBL:EQJ54766.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
sugar phosphate isomerase/epimerase
L2_031_030G1_scaffold_142_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27051..29807)
DNA (2757bp) protein (919aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1B687_9FIRM
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EQJ54765.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
sigma-54 dependent transcription regulator
L2_031_030G1_scaffold_142_30
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

30421..31404
DNA (984bp) protein (328aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1B686_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO31107.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
Displaying items 1-30 of 37 in total

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