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L2_037_000G1_scaffold_1214

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_000G1_scaffold_1214_1
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1559..1849)
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BSJ3_9BIFI
CRISPR-associated protein Cas2
L2_037_000G1_scaffold_1214_2
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1916..2947)
DNA (1032bp) protein (344aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BSJ4_9BIFI
CRISPR-associated protein Cas1
L2_037_000G1_scaffold_1214_3
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2947..3624)
DNA (678bp) protein (226aa)
CRISPR-associated protein Cas4 n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BSJ5_9BIFI
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:KEF28021.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
CRISPR-associated protein Cas4
L2_037_000G1_scaffold_1214_4
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3658..4503)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BSJ6_9BIFI
CRISPR-associated protein {ECO:0000313|EMBL:KEF28020.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
CRISPR-associated protein
L2_037_000G1_scaffold_1214_5
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4563..6440)
DNA (1878bp) protein (626aa)
Putative CRISPR-associated protein, Csd1 family n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BSJ7_9BIFI
CRISPR-associated protein {ECO:0000313|EMBL:KEF28019.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
CRISPR-associated protein
L2_037_000G1_scaffold_1214_6
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6444..7151)
DNA (708bp) protein (236aa)
CRISPR-associated protein Cas5, Dvulg subtype n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BSJ8_9BIFI
CRISPR-associated protein Cas5
CRISPR-associated protein {ECO:0000313|EMBL:BAR04040.1}; CRISPR-associated protein Cas5, Dvulg subtype {ECO:0000313|EMBL:EEG71148.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
L2_037_000G1_scaffold_1214_7
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7394..9811)
DNA (2418bp) protein (806aa)
CRISPR-associated helicase Cas3 n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BSJ9_9BIFI
CRISPR-associated protein Cas3
CRISPR-associated protein Cas3 {ECO:0000313|EMBL:AIZ14979.1}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
L2_037_000G1_scaffold_1214_8
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10383..13697)
DNA (3315bp) protein (1105aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
ileS; isoleucine--tRNA ligase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=3 Tax=Bifidobacterium RepID=C0BSK1_9BIFI
L2_037_000G1_scaffold_1214_9
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14123..15571)
DNA (1449bp) protein (483aa)
Glycoside/pentoside/hexuronide transporter n=2 Tax=Bifidobacterium RepID=C0BSK2_9BIFI
Sodium:solute symporter {ECO:0000313|EMBL:KEF28016.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
galactoside symporter
L2_037_000G1_scaffold_1214_10
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15890..16900)
DNA (1011bp) protein (337aa)
Transcriptional regulator, LacI family n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BSK3_9BIFI
Transcriptional regulator {ECO:0000313|EMBL:BAR04045.1}; Transcriptional regulator, LacI family {ECO:0000313|EMBL:EEG71153.1}; TaxID=547043 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505.;"
LacI family transcriptional regulator
L2_037_000G1_scaffold_1214_11
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17277..19334)
DNA (2058bp) protein (686aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6PYI7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14787.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
ABC transporter
L2_037_000G1_scaffold_1214_12
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19348..21159)
DNA (1812bp) protein (604aa)
ABC transporter, ATP-binding protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BSK7_9BIFI
ABC transporter {ECO:0000313|EMBL:KEF28012.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
ABC transporter
L2_037_000G1_scaffold_1214_13
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21200..21922)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6NU78_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14790.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
MarR family transcriptional regulator
L2_037_000G1_scaffold_1214_14
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22076..24322)
DNA (2247bp) protein (749aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6P8B2_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14791.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
beta-glucosidase
L2_037_000G1_scaffold_1214_15
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24579..25157
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6PYJ2_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14792.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
TetR-type transcriptional regulator
L2_037_000G1_scaffold_1214_16
Bifidobacterium pseudocatenulatum CAG:263, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25213..26388
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum CAG:263 RepID=R6NRI8_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDC14793.1}; TaxID=1263060 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium pseudocatenulatum CAG:263.;"
glxK; glycerate kinase
L2_037_000G1_scaffold_1214_17
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26363..27679)
DNA (1317bp) protein (439aa)
MFS-type transporter n=2 Tax=Bifidobacterium dentium RepID=D2Q798_BIFDB
Transporter {ECO:0000313|EMBL:KEF28007.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
transporter
L2_037_000G1_scaffold_1214_18
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27853..30525)
DNA (2673bp) protein (891aa)
Alpha-L-rhamnosidase n=2 Tax=Bifidobacterium dentium RepID=D2Q797_BIFDB
Alpha-L-rhamnosidase {ECO:0000313|EMBL:KEF28006.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
alpha-L-rhamnosidase
L2_037_000G1_scaffold_1214_19
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30716..32014)
DNA (1299bp) protein (433aa)
MFS-family sugar transporter n=4 Tax=Bifidobacterium dentium RepID=D2Q796_BIFDB
Sugar transporter {ECO:0000313|EMBL:KEF28005.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
sugar transporter
L2_037_000G1_scaffold_1214_20
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32349..33395
DNA (1047bp) protein (349aa)
Transcriptional regulator n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8ATG7_BIFLN
Sugar-binding protein {ECO:0000313|EMBL:KEF28004.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
sugar-binding protein
L2_037_000G1_scaffold_1214_21
Bifidobacterium moukalabense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33748..33924
DNA (177bp) protein (59aa)
Transcriptional regulator, MerR family n=2 Tax=Bifidobacterium dentium RepID=E0Q536_9BIFI
MerR family transcriptional regulator {ECO:0000313|EMBL:ETY71746.1}; TaxID=1435051 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium moukalabense DSM 27321.;"
MerR family transcriptional regulator
L2_037_000G1_scaffold_1214_22
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34598..36097)
DNA (1500bp) protein (500aa)
Lincomycin resistance protein LmrB n=1 Tax=Bifidobacterium angulatum DSM 20098 = JCM 7096 RepID=C4FGB0_9BIFI
Lincomycin resistance protein LmrB {ECO:0000313|EMBL:KEF28002.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
multidrug resistance protein B
L2_037_000G1_scaffold_1214_23
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36342..38684)
DNA (2343bp) protein (781aa)
Glycosyl hydrolase family 3 N-terminal domain protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XT49_9BIFI
Beta-D-glucosideglucohydrolase {ECO:0000313|EMBL:KEF28001.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
beta-D-glucosideglucohydrolase
L2_037_000G1_scaffold_1214_24
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(38853..39488)
DNA (636bp) protein (212aa)
Transcriptional regulator, TetR family n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A933_BIFAD
AcrR family transcriptional regulator {ECO:0000313|EMBL:KEF28000.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
putative TetR-type transcriptional regulator
L2_037_000G1_scaffold_1214_25
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(39536..40735)
DNA (1200bp) protein (400aa)
Probable beta-1,3-exoglucanase n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A2Q0_BIFAA
Glycosyl hydrolase family 5 {ECO:0000313|EMBL:KEF27999.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
beta-1,3-exoglucanase
L2_037_000G1_scaffold_1214_26
Bifidobacterium pseudocatenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(40958..42604)
DNA (1647bp) protein (549aa)
Glycosyl hydrolase, family 43 n=2 Tax=Bifidobacterium RepID=B6XT42_9BIFI
Xylan 1,4-beta-xylosidase {ECO:0000313|EMBL:KEF27998.1}; TaxID=1454376 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium pseudocatenulatum IPLA36007.;"
xylan 1,4-beta-xylosidase
L2_037_000G1_scaffold_1214_27
Brachyspira pilosicoli, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(42733..43089)
DNA (357bp) protein (119aa)
Aminoglycoside nucleotidyltransferase, putative n=4 Tax=root RepID=F5VD09_9LACO
putative aminoglycoside nucleotidyltransferase
Putative aminoglycoside nucleotidyltransferase {ECO:0000313|EMBL:ADK31174.1}; TaxID=759914 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira.;" source="Brachyspira pilosicoli (strain ATCC BAA-1826 / 95/1000).;"
L2_037_000G1_scaffold_1214_28
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(43113..43430)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Campylobacter jejuni RepID=Q4VR88_CAMJU
transposase
Transposase-like protein {ECO:0000313|EMBL:CDB98413.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
L2_037_000G1_scaffold_1214_29
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(43708..44013)
DNA (306bp) protein (102aa)
Transposase (Fragment) n=1 Tax=human gut metagenome RepID=K1TBF9_9ZZZZ
transposase
Transposase-like protein {ECO:0000313|EMBL:CDB98413.1}; TaxID=1263086 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
L2_037_000G1_scaffold_1214_30
Bifidobacterium kashiwanohense, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(44231..45445)
DNA (1215bp) protein (405aa)
Glucan 1,3-beta-glucosidase n=4 Tax=Bifidobacterium dentium RepID=D2Q5Q5_BIFDB
beta-glucosidase
Beta-glucosidase {ECO:0000313|EMBL:AIZ14998.1}; TaxID=1447716 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium kashiwanohense PV20-2.;"
Displaying items 1-30 of 53 in total

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