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L2_037_000G1_scaffold_90

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Displaying items 1-30 of 136 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_000G1_scaffold_90_1
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..3889
DNA (3888bp) protein (1296aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EEV0_9FIRM
DNA-directed RNA polymerase subunit beta
L2_037_000G1_scaffold_90_2
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3908..7636
DNA (3729bp) protein (1243aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D8B5_9CLOT
DNA-directed RNA polymerase subunit beta'
L2_037_000G1_scaffold_90_3
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7701..8297)
DNA (597bp) protein (199aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IH89_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI59160.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
hypothetical protein
L2_037_000G1_scaffold_90_4
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8617..10206
DNA (1590bp) protein (530aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D885_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG52472.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
hypothetical protein
L2_037_000G1_scaffold_90_5
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10160..11398
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D884_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG52471.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
AAA domain (dynein-related subfamily).
L2_037_000G1_scaffold_90_6
unknown

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11482..11676
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Lachnospiraceae bacterium NK4A136 RepID=UPI0003B46902
L2_037_000G1_scaffold_90_7
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11816..14512
DNA (2697bp) protein (899aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D883_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG52470.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
L2_037_000G1_scaffold_90_8
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14887..15621
DNA (735bp) protein (245aa)
Tyrosine-protein phosphatase family protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D882_9CLOT
Tyrosine-protein phosphatase family protein {ECO:0000313|EMBL:EEG52469.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Protein tyrosine/serine phosphatase
L2_037_000G1_scaffold_90_9
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15789..17000
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D880_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG52467.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
hypothetical protein
L2_037_000G1_scaffold_90_10
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17227..17946
DNA (720bp) protein (240aa)
GntR domain protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6M0S6_CLOB8
GntR family transcriptional regulator
GntR domain protein {ECO:0000313|EMBL:ABR36206.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L2_037_000G1_scaffold_90_11
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18121..19275
DNA (1155bp) protein (385aa)
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RPC0_9FIRM
hypothetical protein
Tax=BJP_IG2069_Clostridiales_48_15
L2_037_000G1_scaffold_90_12
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19275..19748
DNA (474bp) protein (158aa)
ypqE; putative phosphotransferase IIA component YpqE (EC:2.7.1.-)
PTS system, IIBC component n=6 Tax=Clostridium clostridioforme RepID=N9XKX7_9CLOT
PTS system, IIBC component {ECO:0000313|EMBL:ENZ66327.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
L2_037_000G1_scaffold_90_13
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19788..21191
DNA (1404bp) protein (468aa)
PTS system, N-acetylglucosamine-specific IIBC subunit (EC:2.7.1.69)
PTS acetylglucosamine transporter subunit IIB n=1 Tax=Geobacillus caldoxylosilyticus RepID=UPI0002FC1F8A
PTS sugar transporter {ECO:0000313|EMBL:KGG79489.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
L2_037_000G1_scaffold_90_14
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21609..24287
DNA (2679bp) protein (893aa)
Sigma-70 region 2 n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D878_9CLOT
Sigma-70 region 2 {ECO:0000313|EMBL:EEG52465.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
RNA polymerase sigma factor, sigma-70 family
L2_037_000G1_scaffold_90_15
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24350..27250
DNA (2901bp) protein (967aa)
Sigma-70 region 2 n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D877_9CLOT
Sigma-70 region 2 {ECO:0000313|EMBL:EEG52464.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
RNA polymerase sigma factor, sigma-70 family
L2_037_000G1_scaffold_90_16
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27308..30130
DNA (2823bp) protein (941aa)
Sigma-70 region 2 n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D877_9CLOT
Sigma-70 region 2 {ECO:0000313|EMBL:EEG52464.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
RNA polymerase sigma factor, sigma-70 family
L2_037_000G1_scaffold_90_17
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(30210..30929)
DNA (720bp) protein (240aa)
UbiC transcription regulator-associated domain protein n=1 Tax=Collinsella sp. CAG:289 RepID=R7D8P3_9ACTN
UbiC transcription regulator-associated domain protein {ECO:0000313|EMBL:CDD85857.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
GntR family transcriptional regulator
L2_037_000G1_scaffold_90_18
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

31208..32311
DNA (1104bp) protein (368aa)
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16)
SIS domain protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4I0_9FIRM
SIS domain protein {ECO:0000313|EMBL:EEF69160.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
L2_037_000G1_scaffold_90_19
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

32312..32734
DNA (423bp) protein (141aa)
PTS system fructose IIA component n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GD69_9ACTN
PTS system fructose IIA component {ECO:0000313|EMBL:EEA89770.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
phosphotransferase system, mannose/fructose-specific component IIA
L2_037_000G1_scaffold_90_20
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

32811..33308
DNA (498bp) protein (166aa)
PTS system sorbose subfamily IIB component n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4H8_9FIRM
PTS system sorbose subfamily IIB component {ECO:0000313|EMBL:EEF69158.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB
L2_037_000G1_scaffold_90_21
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

33321..34088
DNA (768bp) protein (256aa)
PTS system sorbose-specific iic component n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4H7_9FIRM
PTS system sorbose-specific iic component {ECO:0000313|EMBL:EEF69157.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
levF; PTS system, mannose-specific enzyme II, C component
L2_037_000G1_scaffold_90_22
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

34091..34909
DNA (819bp) protein (273aa)
PTS system, mannose/fructose/sorbose family, IID component n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GD66_9ACTN
PTS system, mannose/fructose/sorbose family, IID component {ECO:0000313|EMBL:EEA89767.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
PTS system mannose/fructose/sorbose family transporter subunit IID
L2_037_000G1_scaffold_90_23
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

34931..35653
DNA (723bp) protein (241aa)
N-acylglucosamine-6-phosphate 2-epimerase {ECO:0000256|SAAS:SAAS00074327}; EC=5.1.3.9 {ECO:0000256|SAAS:SAAS00074327};; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Putative N-acetylmannosamine-6-phosphate epimerase (EC:5.1.3.9)
Putative N-acetylmannosamine-6-phosphate epimerase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4H5_9FIRM
L2_037_000G1_scaffold_90_24
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

35646..36314
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y4H4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF69154.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
L2_037_000G1_scaffold_90_25
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

36330..37415
DNA (1086bp) protein (362aa)
SIS domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GD64_9ACTN
SIS domain protein {ECO:0000313|EMBL:EEA89765.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
sugar isomerase
L2_037_000G1_scaffold_90_26
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


37675..38094
DNA (420bp) protein (140aa)
30S ribosomal protein S12 n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D875_9CLOT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
SSU ribosomal protein S12P
L2_037_000G1_scaffold_90_27
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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38295..38765
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D874_9CLOT
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
30S ribosomal protein S7
L2_037_000G1_scaffold_90_28
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38809..40926
DNA (2118bp) protein (706aa)
Elongation factor G n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D873_9CLOT
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
translation elongation factor G
L2_037_000G1_scaffold_90_29
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

41103..42296
DNA (1194bp) protein (398aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D872_9CLOT
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
L2_037_000G1_scaffold_90_30
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42481..42924
DNA (444bp) protein (148aa)
Putative MarR protein n=1 Tax=Clostridium sp. D5 RepID=F0Z3B9_9CLOT
Putative MarR protein {ECO:0000313|EMBL:EGB91551.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
putative MarR family transcriptional regulator
Displaying items 1-30 of 136 in total

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