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L2_037_000G1_scaffold_323

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_000G1_scaffold_323_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1..165)
DNA (165bp) protein (55aa)
Protein RecA n=2 Tax=Clostridium RepID=B6FS94_9CLOT
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
protein RecA
L2_037_000G1_scaffold_323_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(398..1948)
DNA (1551bp) protein (517aa)
Transporter, SSS family n=2 Tax=Clostridium RepID=B6FS95_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24611.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Na+/solute symporter
L2_037_000G1_scaffold_323_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2059..2538)
DNA (480bp) protein (160aa)
Methylglyoxal synthase {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089917}; Short=MGS {ECO:0000256|HAMAP-Rule:MF_00549};; EC=4.2.3.3 {ECO:0000256|HAMAP-Rule:MF_00549, ECO:0000256|SAAS:SAAS00089921};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
mgsA; methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase n=2 Tax=Clostridium RepID=B6FS96_9CLOT
L2_037_000G1_scaffold_323_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2557..4125)
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PV43_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24609.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC transporter permease
L2_037_000G1_scaffold_323_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4125..4820)
DNA (696bp) protein (232aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FS98_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24605.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC transporter ATP-binding protein
L2_037_000G1_scaffold_323_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4909..5580)
DNA (672bp) protein (224aa)
Bacterial transferase hexapeptide repeat protein n=2 Tax=Clostridium RepID=B6FS99_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24604.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_037_000G1_scaffold_323_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5587..7587)
DNA (2001bp) protein (667aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Topoisomerase IA (EC:5.99.1.2)
DNA topoisomerase n=3 Tax=Clostridium RepID=R6PJU5_9CLOT
L2_037_000G1_scaffold_323_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7684..8769)
DNA (1086bp) protein (362aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EEA81059.1}; EC=1.2.1.11 {ECO:0000313|EMBL:EEA81059.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=2 Tax=Clostridium RepID=B6FSA3_9CLOT
L2_037_000G1_scaffold_323_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8849..10243)
DNA (1395bp) protein (465aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=2 Tax=Clostridium RepID=B6FSA4_9CLOT
L2_037_000G1_scaffold_323_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10262..10915)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSA5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81061.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_037_000G1_scaffold_323_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11016..11783
DNA (768bp) protein (256aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridium RepID=B6FSA6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24595.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
L2_037_000G1_scaffold_323_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11776..12573
DNA (798bp) protein (266aa)
ABC transporter, permease protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSA7_9CLOT
ABC transporter, permease protein {ECO:0000313|EMBL:EEA81063.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
L2_037_000G1_scaffold_323_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12639..13430)
DNA (792bp) protein (264aa)
Cof-like hydrolase n=2 Tax=Clostridium RepID=B6FSA8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24509.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
HAD-superfamily hydrolase, subfamily IIB
L2_037_000G1_scaffold_323_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13680..14594)
DNA (915bp) protein (305aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=2 Tax=Clostridium RepID=B6FSA9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24500.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Small-conductance mechanosensitive channel
L2_037_000G1_scaffold_323_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14604..15455)
DNA (852bp) protein (284aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FSB0_9CLOT
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
conserved hypothetical protein TIGR00726
L2_037_000G1_scaffold_323_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15466..15819)
DNA (354bp) protein (118aa)
UPF0102 protein CLONEX_03036 n=2 Tax=Clostridium RepID=B6FSB1_9CLOT
UPF0102 protein CLONEX_03036 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
conserved hypothetical protein TIGR00252
L2_037_000G1_scaffold_323_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15856..16614)
DNA (759bp) protein (253aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII n=2 Tax=Clostridium RepID=B6FSB2_9CLOT
L2_037_000G1_scaffold_323_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16607..17152)
DNA (546bp) protein (182aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUS5_9CLOT
L2_037_000G1_scaffold_323_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17178..18029)
DNA (852bp) protein (284aa)
Ribosome biogenesis GTPase A n=2 Tax=Clostridium RepID=B6FSB4_9CLOT
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ribosome biogenesis GTP-binding protein YlqF
L2_037_000G1_scaffold_323_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18041..18613)
DNA (573bp) protein (191aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Signal peptidase I n=2 Tax=Clostridium RepID=B6FSB5_9CLOT
signal peptidase I
L2_037_000G1_scaffold_323_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(18678..19025)
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=2 Tax=Clostridium RepID=B6FSB6_9CLOT
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
rplS; 50S ribosomal protein L19
L2_037_000G1_scaffold_323_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19122..19817)
DNA (696bp) protein (232aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Clostridium RepID=B6FSB7_9CLOT
L2_037_000G1_scaffold_323_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19860..20366)
DNA (507bp) protein (169aa)
Ribosome maturation factor RimM n=2 Tax=Clostridium RepID=B6FSB8_9CLOT
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
rimM; 16S rRNA-processing protein RimM
L2_037_000G1_scaffold_323_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20415..20642)
DNA (228bp) protein (76aa)
UPF0109 protein CLONEX_03044 n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSB9_9CLOT
UPF0109 protein CLONEX_03044 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
RNA-binding protein (KH domain)
L2_037_000G1_scaffold_323_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(20666..20911)
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=2 Tax=Clostridium RepID=B6FSC0_9CLOT
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
SSU ribosomal protein S16P
L2_037_000G1_scaffold_323_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(20960..22309)
DNA (1350bp) protein (450aa)
Signal recognition particle protein n=2 Tax=Clostridium RepID=B6FSC1_9CLOT
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
signal recognition particle protein
L2_037_000G1_scaffold_323_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22311..22661)
DNA (351bp) protein (117aa)
Helix-turn-helix protein, YlxM/p13 family n=2 Tax=Clostridium RepID=B6FSC2_9CLOT
UPF0122 protein CLONEX_03047 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_037_000G1_scaffold_323_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22733..23308)
DNA (576bp) protein (192aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
xanthine phosphoribosyltransferase (EC:2.4.2.22)
Xanthine phosphoribosyltransferase n=2 Tax=Clostridium RepID=B6FSC3_9CLOT
L2_037_000G1_scaffold_323_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23411..24322)
DNA (912bp) protein (304aa)
Peptidase, S8/S53 family {ECO:0000313|EMBL:EEA81080.1}; EC=3.4.21.- {ECO:0000313|EMBL:EEA81080.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Peptidase, S8/S53 family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSC4_9CLOT
peptidase S8 and S53 subtilisin kexin sedolisin
L2_037_000G1_scaffold_323_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24485..24760
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSC5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81081.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Displaying items 1-30 of 104 in total

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