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L2_037_000M1_scaffold_419

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_000M1_scaffold_419_1
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..297)
DNA (297bp) protein (99aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EU81_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EEG37183.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
Signal transduction histidine kinase
L2_037_000M1_scaffold_419_2
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(254..1069)
DNA (816bp) protein (272aa)
Amino acid ABC transporter substrate-binding protein PAAT family (TC 3.A.1.3.-) n=2 Tax=Clostridiales RepID=R5U9C6_9FIRM
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:ERK50816.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L2_037_000M1_scaffold_419_3
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1207..4158)
DNA (2952bp) protein (984aa)
Signal transduction histidine kinase n=1 Tax=Roseburia sp. CAG:50 RepID=R5TIQ4_9FIRM
Signal transduction histidine kinase {ECO:0000313|EMBL:CCZ65563.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Signal transduction histidine kinase
L2_037_000M1_scaffold_419_4
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4164..6014)
DNA (1851bp) protein (617aa)
ABC-type sugar transport system periplasmic component n=1 Tax=Roseburia sp. CAG:50 RepID=R5TQK0_9FIRM
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:CCZ65564.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
ABC-type sugar transport system, periplasmic component
L2_037_000M1_scaffold_419_5
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6059..7555)
DNA (1497bp) protein (499aa)
Response regulator receiver domain protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TIT8_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CCZ65565.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Response regulator containing a CheY-like receiver domain and an HD-GYP domain
L2_037_000M1_scaffold_419_6
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8114..11371)
DNA (3258bp) protein (1086aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U352_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65566.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L2_037_000M1_scaffold_419_7
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11614..12846)
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U252_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65206.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L2_037_000M1_scaffold_419_8
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12918..13688)
DNA (771bp) protein (257aa)
Protein FdhD homolog n=1 Tax=Roseburia sp. CAG:50 RepID=R5U869_9FIRM
Protein FdhD homolog {ECO:0000256|SAAS:SAAS00093832}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
formate dehydrogenase family accessory protein FdhD
L2_037_000M1_scaffold_419_9
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13707..16418)
DNA (2712bp) protein (904aa)
Formate dehydrogenase, alpha subunit n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q478_9FIRM
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:ERK50824.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
formate dehydrogenase subunit alpha
L2_037_000M1_scaffold_419_10
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16459..18297)
DNA (1839bp) protein (613aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PJU1_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ERK50825.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
gltD; putative glutamate synthase (NADPH) small subunit
L2_037_000M1_scaffold_419_11
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18478..19308)
DNA (831bp) protein (277aa)
Putative formate transporter FocA n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q374_9FIRM
Putative formate transporter FocA {ECO:0000313|EMBL:ERK50826.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Formate/nitrite family of transporters
L2_037_000M1_scaffold_419_12
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19557..21140
DNA (1584bp) protein (528aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RJD2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK50827.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L2_037_000M1_scaffold_419_13
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21271..23451)
DNA (2181bp) protein (727aa)
YhgE/Pip domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q484_9FIRM
YhgE/Pip domain protein {ECO:0000313|EMBL:ERK50829.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L2_037_000M1_scaffold_419_14
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23451..26021)
DNA (2571bp) protein (857aa)
YhgE/Pip domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PJU4_9FIRM
YhgE/Pip domain protein {ECO:0000313|EMBL:ERK50830.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain
L2_037_000M1_scaffold_419_15
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26288..26977)
DNA (690bp) protein (230aa)
Transcriptional regulator, GntR family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q377_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ERK50831.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Transcriptional regulators
L2_037_000M1_scaffold_419_16
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27003..28226)
DNA (1224bp) protein (408aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
peptidase T (EC:3.4.11.4)
Peptidase T n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RJE0_9FIRM
L2_037_000M1_scaffold_419_17
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28393..30123)
DNA (1731bp) protein (577aa)
Periplasmic oligopeptide-binding family protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RB49_9FIRM
Periplasmic oligopeptide-binding family protein {ECO:0000313|EMBL:ERK50833.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
periplasmic murein peptide-binding protein
L2_037_000M1_scaffold_419_18
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30235..31272)
DNA (1038bp) protein (346aa)
Oligopeptide/dipeptide ABC transporter ATP-binding protein domain n=2 Tax=Clostridiales RepID=R5THS1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERK50834.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
L2_037_000M1_scaffold_419_19
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31265..32329)
DNA (1065bp) protein (355aa)
Oligopeptide ABC transporter, ATP-binding protein OppD n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PJU9_9FIRM
Oligopeptide ABC transporter, ATP-binding protein OppD {ECO:0000313|EMBL:ERK50835.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
oligopeptide/dipeptide ABC transporter ATPase
L2_037_000M1_scaffold_419_20
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32347..33693)
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5U884_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65222.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
oligopeptide transport system permease OppC
L2_037_000M1_scaffold_419_21
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33696..34637)
DNA (942bp) protein (314aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5THN9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65223.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
binding-protein-dependent transport system inner membrane protein
L2_037_000M1_scaffold_419_22
unknown

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34934..35221
DNA (288bp) protein (96aa)

This feature has no annotations

L2_037_000M1_scaffold_419_23
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35279..36301
DNA (1023bp) protein (341aa)
M42 glutamyl aminopeptidase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q494_9FIRM
M42 glutamyl aminopeptidase {ECO:0000313|EMBL:ERK50839.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Cellulase M and related proteins
L2_037_000M1_scaffold_419_24
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36543..37901)
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RJ92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK50787.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Predicted ATPase (AAA+ superfamily)
L2_037_000M1_scaffold_419_25
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38174..38956)
DNA (783bp) protein (261aa)
PRD domain protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q439_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ65226.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
bglG; cryptic beta-glucoside bgl operon antiterminator
L2_037_000M1_scaffold_419_26
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(39270..40898)
DNA (1629bp) protein (543aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q340_9FIRM
L2_037_000M1_scaffold_419_27
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40900..43233)
DNA (2334bp) protein (778aa)
ptsG: PTS system glucose-specific EIICBA component (EC:2.7.1.69 2.7.1.-)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TDU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ63823.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L2_037_000M1_scaffold_419_28
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43322..43876)
DNA (555bp) protein (185aa)
Signal peptidase I n=2 Tax=Clostridiales RepID=R5U3Z1_9FIRM
Signal peptidase I {ECO:0000313|EMBL:CCZ63822.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L2_037_000M1_scaffold_419_29
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(43873..44175)
DNA (303bp) protein (101aa)
Putative ATP-dependent DNA helicase n=1 Tax=Roseburia sp. CAG:50 RepID=R5TF59_9FIRM
Putative ATP-dependent DNA helicase {ECO:0000313|EMBL:CCZ64308.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen
L2_037_000M1_scaffold_419_30
unknown

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comp(44406..44549)
DNA (144bp) protein (48aa)

This feature has no annotations

Displaying items 1-30 of 32 in total

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