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L2_037_000M1_scaffold_611

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_000M1_scaffold_611_1
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9..1226)
DNA (1218bp) protein (406aa)
stage IV sporulation protein B (EC:3.4.21.116)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TNP7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64974.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L2_037_000M1_scaffold_611_2
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1386..3062)
DNA (1677bp) protein (559aa)
DNA repair protein RecN n=1 Tax=Roseburia sp. CAG:50 RepID=R5TH11_9FIRM
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
DNA repair ATPase
L2_037_000M1_scaffold_611_3
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3081..3533)
DNA (453bp) protein (151aa)
Arginine repressor n=2 Tax=Clostridiales RepID=R5U7F6_9FIRM
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
transcriptional regulator, ArgR family
L2_037_000M1_scaffold_611_4
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3545..4426)
DNA (882bp) protein (294aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Probable inorganic polyphosphate/ATP-NAD kinase n=2 Tax=Clostridiales RepID=R5U1H1_9FIRM
30S ribosomal protein S3
L2_037_000M1_scaffold_611_5
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4407..5210)
DNA (804bp) protein (268aa)
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2R0Z1_9FIRM
Ribosomal RNA large subunit methyltransferase J {ECO:0000313|EMBL:ERK47283.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hemolysin TlyA family protein
L2_037_000M1_scaffold_611_6
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5300..7162)
DNA (1863bp) protein (621aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Roseburia sp. CAG:50 RepID=R5TNP3_9FIRM
hypothetical protein
L2_037_000M1_scaffold_611_7
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7172..8059)
DNA (888bp) protein (296aa)
Geranyltranstransferase n=1 Tax=Roseburia sp. CAG:50 RepID=R5TH04_9FIRM
Geranyltranstransferase {ECO:0000313|EMBL:CCZ64968.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
geranyltranstransferase
L2_037_000M1_scaffold_611_8
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8073..8300)
DNA (228bp) protein (76aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Exonuclease VII small subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit n=2 Tax=Clostridiales RepID=R5U7E7_9FIRM
L2_037_000M1_scaffold_611_9
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8305..9519)
DNA (1215bp) protein (405aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Exodeoxyribonuclease 7 large subunit n=1 Tax=Roseburia sp. CAG:50 RepID=R5U1G6_9FIRM
XseA; exonuclease VII, large subunit
L2_037_000M1_scaffold_611_10
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9516..9911)
DNA (396bp) protein (132aa)
N utilization substance protein B homolog n=2 Tax=Clostridiales RepID=U2R0Y7_9FIRM
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
NusB antitermination factor
L2_037_000M1_scaffold_611_11
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9999..10382)
DNA (384bp) protein (128aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TNN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64964.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L2_037_000M1_scaffold_611_12
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10464..11936)
DNA (1473bp) protein (491aa)
Chromate transport protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TGZ8_9FIRM
Chromate transport protein {ECO:0000313|EMBL:CCZ64963.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L2_037_000M1_scaffold_611_13
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11980..13989)
DNA (2010bp) protein (670aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
DNA ligase, NAD-dependent (EC:6.5.1.2)
DNA ligase n=1 Tax=Roseburia sp. CAG:50 RepID=R5U7D8_9FIRM
L2_037_000M1_scaffold_611_14
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14002..14781)
DNA (780bp) protein (260aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Pseudouridine synthase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PU19_9FIRM
pseudouridylate synthase
L2_037_000M1_scaffold_611_15
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14871..15323)
DNA (453bp) protein (151aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5U1E6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64946.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
L2_037_000M1_scaffold_611_16
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15450..16877)
DNA (1428bp) protein (476aa)
Bacterial SH3 domain n=1 Tax=Roseburia sp. CAG:50 RepID=R5TH02_9FIRM
Bacterial SH3 domain {ECO:0000313|EMBL:CCZ64945.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Bacterial SH3 domain.
L2_037_000M1_scaffold_611_17
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

Not on your lists

17188..18186
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6BFH9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA62998.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
hypothetical protein
L2_037_000M1_scaffold_611_18
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18012..19613)
DNA (1602bp) protein (534aa)
NAD dependent epimerase/dehydratase family protein n=2 Tax=Clostridiales RepID=R5TGY0_9FIRM
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:CCZ64943.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Nucleoside-diphosphate-sugar epimerases
L2_037_000M1_scaffold_611_19
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19644..20156)
DNA (513bp) protein (171aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Shikimate kinase n=1 Tax=Roseburia sp. CAG:50 RepID=R5U7B6_9FIRM
hypothetical protein
L2_037_000M1_scaffold_611_20
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20188..20952)
DNA (765bp) protein (255aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
3-dehydroquinate dehydratase n=2 Tax=Clostridiales RepID=U2R986_9FIRM
hypothetical protein
L2_037_000M1_scaffold_611_21
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21012..22031
DNA (1020bp) protein (340aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Shikimate dehydrogenase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PT18_9FIRM
hypothetical protein
L2_037_000M1_scaffold_611_22
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22044..23075
DNA (1032bp) protein (344aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TNL3_9FIRM
hypothetical protein
L2_037_000M1_scaffold_611_23
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23253..23879)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PU10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK47264.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L2_037_000M1_scaffold_611_24
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23907..24449)
DNA (543bp) protein (181aa)
ADP-ribose pyrophosphatase n=2 Tax=Clostridiales RepID=R5U7B1_9FIRM
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:CCZ64937.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
MutT; NTP pyrophosphohydrolase including oxidative damage repair enzyme
L2_037_000M1_scaffold_611_25
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24551..25048)
DNA (498bp) protein (166aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
7-cyano-7-deazaguanine reductase (EC:1.7.1.13)
PreQ(1) synthase n=2 Tax=Clostridiales RepID=U2R981_9FIRM
L2_037_000M1_scaffold_611_26
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25156..25842)
DNA (687bp) protein (229aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
7-cyano-7-deazaguanine synthase n=1 Tax=Roseburia sp. CAG:50 RepID=R5TGZ1_9FIRM
preQ(0) biosynthesis protein QueC
L2_037_000M1_scaffold_611_27
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25972..26550)
DNA (579bp) protein (193aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
GTP cyclohydrolase 1 n=2 Tax=Clostridiales RepID=R5TNK5_9FIRM
hypothetical protein
L2_037_000M1_scaffold_611_28
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26569..27237)
DNA (669bp) protein (223aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
7-carboxy-7-deazaguanine synthase n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PU07_9FIRM
queE; MoaA family Fe-S oxidoreductase
L2_037_000M1_scaffold_611_29
unknown

Not on your lists

comp(27234..27344)
DNA (111bp) protein (37aa)

This feature has no annotations

L2_037_000M1_scaffold_611_30
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27307..27726)
DNA (420bp) protein (140aa)
6-carboxy-5 6 7 8-tetrahydropterin synthase n=2 Tax=Clostridiales RepID=R5U7A7_9FIRM
Queuosine biosynthesis protein QueD {ECO:0000313|EMBL:ERK47258.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
6-pyruvoyl tetrahydrobiopterin synthase
Displaying items 1-30 of 40 in total

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