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L2_037_000M1_scaffold_895

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_000M1_scaffold_895_1
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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513..992
DNA (480bp) protein (160aa)
30S ribosomal protein S4 n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z3R7_9CLOT
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
SSU ribosomal protein S4P
L2_037_000M1_scaffold_895_2
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1037..1996
DNA (960bp) protein (320aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z9T3_9CLOT
DNA-directed RNA polymerase subunit alpha
L2_037_000M1_scaffold_895_3
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2102..2638
DNA (537bp) protein (179aa)
50S ribosomal protein L17 n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z3S9_9CLOT
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
LSU ribosomal protein L17P
L2_037_000M1_scaffold_895_4
unknown

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comp(2757..2981)
DNA (225bp) protein (75aa)

This feature has no annotations

L2_037_000M1_scaffold_895_5
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3019..3990)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CXC4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG56248.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
SARP family transcriptional regulator
L2_037_000M1_scaffold_895_6
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4207..8907
DNA (4701bp) protein (1567aa)
von Willebrand factor type A domain n=1 Tax=Clostridium sp. CAG:149 RepID=R5M6P5_9CLOT
von Willebrand factor type A domain {ECO:0000313|EMBL:CCY87198.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
von Willebrand factor type A domain.
L2_037_000M1_scaffold_895_7
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8943..9476
DNA (534bp) protein (178aa)
Signal peptidase I n=3 Tax=Clostridium RepID=G5FB02_9CLOT
Signal peptidase I {ECO:0000313|EMBL:EHF06493.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
signal peptidase I
L2_037_000M1_scaffold_895_8
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9460..10164
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SR73_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA94209.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L2_037_000M1_scaffold_895_9
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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10313..10987
DNA (675bp) protein (225aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IAY4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI61299.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
hypothetical protein
L2_037_000M1_scaffold_895_10
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11078..12007
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SR70_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF06489.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L2_037_000M1_scaffold_895_11
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12166..13206)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=D4CFF6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFE11608.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L2_037_000M1_scaffold_895_12
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13571..14848
DNA (1278bp) protein (426aa)
Putative cell wall binding repeat n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZHP8_9CLOT
Putative cell wall binding repeat {ECO:0000313|EMBL:CDD42969.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Putative cell wall binding repeat.
L2_037_000M1_scaffold_895_13
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15183..16151
DNA (969bp) protein (323aa)
Cobalt ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5LZ65_9CLOT
ABC-type cobalt transport system, ATPase component
Cobalt ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCY84595.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L2_037_000M1_scaffold_895_14
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16173..17039
DNA (867bp) protein (289aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Cobalt ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZG35_9CLOT
cobalt transport protein ATP-binding subunit
L2_037_000M1_scaffold_895_15
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17036..17836
DNA (801bp) protein (267aa)
ABC-type cobalt transport system permease component CbiQ and related transporters n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZVG6_9CLOT
ABC-type cobalt transport system permease component CbiQ and related transporters {ECO:0000313|EMBL:CDD45061.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L2_037_000M1_scaffold_895_16
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17935..19014
DNA (1080bp) protein (360aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
tRNA pseudouridine synthase A n=1 Tax=Clostridium sp. CAG:299 RepID=R7AR87_9CLOT
pseudouridylate synthase I
L2_037_000M1_scaffold_895_17
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19011..20501
DNA (1491bp) protein (497aa)
Transporter SSS family n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z9P8_9CLOT
Transporter SSS family {ECO:0000313|EMBL:CDD45063.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Na+/proline symporter
L2_037_000M1_scaffold_895_18
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20498..21850
DNA (1353bp) protein (451aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Signal transduction histidine kinase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZP02_9CLOT
Signal transduction histidine kinase
L2_037_000M1_scaffold_895_19
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21822..23189
DNA (1368bp) protein (456aa)
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZG38_9CLOT
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains {ECO:0000313|EMBL:CDD45065.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
L2_037_000M1_scaffold_895_20
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23400..24161
DNA (762bp) protein (254aa)
UPF0271 protein BN593_00395 n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZG54_9CLOT
UPF0271 protein BN593_00395 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Uncharacterized proteins, homologs of lactam utilization protein B
L2_037_000M1_scaffold_895_21
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24210..25430
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZVI4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD45086.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Mn2+ and Fe2+ transporters of the NRAMP family
L2_037_000M1_scaffold_895_22
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25602..26330
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZP21_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD45089.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
conserved hypothetical protein TIGR00370
L2_037_000M1_scaffold_895_23
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26334..27440
DNA (1107bp) protein (369aa)
Biotin-dependent carboxylase uncharacterized domain n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZVI9_9CLOT
Biotin-dependent carboxylase uncharacterized domain {ECO:0000313|EMBL:CDD45091.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
biotin-dependent carboxylase uncharacterized domain
L2_037_000M1_scaffold_895_24
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27666..28100
DNA (435bp) protein (145aa)
50S ribosomal protein L13 n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z9S4_9CLOT
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
LSU ribosomal protein L13P
L2_037_000M1_scaffold_895_25
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28129..28521
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=4 Tax=Clostridium RepID=E7GHJ2_CLOSY
SSU ribosomal protein S9P
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Displaying 25 items

View Taxonomy