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L2_037_000M1_scaffold_1890

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_000M1_scaffold_1890_1
unknown

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comp(2..307)
DNA (306bp) protein (102aa)

This feature has no annotations

L2_037_000M1_scaffold_1890_2
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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comp(755..2434)
DNA (1680bp) protein (560aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6VM48_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC93271.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
alpha amylase catalytic subunit
L2_037_000M1_scaffold_1890_3
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2446..3084)
DNA (639bp) protein (213aa)
Beta-phosphoglucomutase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IGW1_9FIRM
Beta-phosphoglucomutase {ECO:0000313|EMBL:CDE51049.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
beta-phosphoglucomutase
L2_037_000M1_scaffold_1890_4
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3101..5410)
DNA (2310bp) protein (770aa)
Beta-phosphoglucomutase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R655_CLOSW
Beta-phosphoglucomutase {ECO:0000313|EMBL:KEZ90053.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
beta-phosphoglucomutase
L2_037_000M1_scaffold_1890_5
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5428..6261)
DNA (834bp) protein (278aa)
ABC transporter permease n=1 Tax=Blautia producta RepID=UPI00037CD70D
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADL03488.1}; Flags: Precursor;; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L2_037_000M1_scaffold_1890_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6276..7187)
DNA (912bp) protein (304aa)
ABC transporter permease n=1 Tax=Blautia producta RepID=UPI0003684B6A
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL10483.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L2_037_000M1_scaffold_1890_7
Lachnospiraceae bacterium oral taxon 082, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7292..8668)
DNA (1377bp) protein (459aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI000369D3D8
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EHO53662.1}; TaxID=861454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium oral taxon 082 str. F0431.;"
extracellular solute-binding protein
L2_037_000M1_scaffold_1890_8
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8803..9822)
DNA (1020bp) protein (340aa)
Transcriptional regulator, LacI family n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R651_CLOSW
Transcriptional regulator {ECO:0000313|EMBL:EXG85153.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
LacI family transcriptional regulator
L2_037_000M1_scaffold_1890_9
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

10219..10548
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AFB6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX39677.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
DNA binding domain, excisionase family
L2_037_000M1_scaffold_1890_10
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10562..10873
DNA (312bp) protein (104aa)
integrase n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B47423
Site-specific recombinase phage integrase family {ECO:0000313|EMBL:CCX42930.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
Site-specific recombinase XerD
L2_037_000M1_scaffold_1890_11
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11635..12195)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDR9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76818.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L2_037_000M1_scaffold_1890_12
unknown

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comp(12318..12539)
DNA (222bp) protein (74aa)

This feature has no annotations

L2_037_000M1_scaffold_1890_13
unknown

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comp(12570..12824)
DNA (255bp) protein (85aa)

This feature has no annotations

L2_037_000M1_scaffold_1890_14
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

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comp(12828..13337)
DNA (510bp) protein (170aa)
Putative toxin-antitoxin system antitoxin component Xre family n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EPB6_9FIRM
Putative toxin-antitoxin system antitoxin component Xre family {ECO:0000313|EMBL:CCX89881.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
hypothetical protein
L2_037_000M1_scaffold_1890_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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13483..14127
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQC9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75101.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Rhomboid family.
L2_037_000M1_scaffold_1890_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14164..14487
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQC8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75100.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_037_000M1_scaffold_1890_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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14487..15380
DNA (894bp) protein (298aa)
DNA polymerase III, delta' subunit domain protein (Fragment) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQC7_9FIRM
DNA polymerase III, delta' subunit domain protein {ECO:0000313|EMBL:EFB75099.1}; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_037_000M1_scaffold_1890_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15413..16252
DNA (840bp) protein (280aa)
PSP1 C-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQC6_9FIRM
PSP1 C-terminal domain protein {ECO:0000313|EMBL:EFB75108.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Uncharacterized homolog of PSP1
L2_037_000M1_scaffold_1890_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16450..16617
DNA (168bp) protein (56aa)
Dissimilatory sulfite reductase (Desulfoviridin), alpha and beta subunits n=2 Tax=Faecalibacterium prausnitzii RepID=D4K8W7_9FIRM
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits
Ferredoxin {ECO:0000313|EMBL:EDP22151.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L2_037_000M1_scaffold_1890_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16934..17677)
DNA (744bp) protein (248aa)
3-dehydroquinate dehydratase, type I (EC:4.2.1.10)
Putative 3-dehydroquinate dehydratase, type I (Fragment) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRW1_9FIRM
Putative 3-dehydroquinate dehydratase, type I {ECO:0000313|EMBL:EFB74489.1}; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_037_000M1_scaffold_1890_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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17805..18677
DNA (873bp) protein (291aa)
Phospholipase, patatin family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRW3_9FIRM
Phospholipase, patatin family {ECO:0000313|EMBL:EFB74491.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_037_000M1_scaffold_1890_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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18949..19605
DNA (657bp) protein (219aa)
HAD hydrolase, family IA, variant 3 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPH1_9FIRM
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EFB75433.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L2_037_000M1_scaffold_1890_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19766..20377
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPH0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75432.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted membrane protein
L2_037_000M1_scaffold_1890_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20532..21266)
DNA (735bp) protein (245aa)
Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000313|EMBL:EFB75185.1}; EC=6.3.4.15 {ECO:0000313|EMBL:EFB75185.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15)
Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ42_9FIRM
L2_037_000M1_scaffold_1890_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21263..21748)
DNA (486bp) protein (162aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Phosphodiesterase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ43_9FIRM
phosphodiesterase, MJ0936 family
L2_037_000M1_scaffold_1890_26
unknown

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21847..22113
DNA (267bp) protein (89aa)

This feature has no annotations

L2_037_000M1_scaffold_1890_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21985..22836)
DNA (852bp) protein (284aa)
Ribosomal RNA small subunit methyltransferase I (Fragment) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQH9_9FIRM
S-adenosylmethionine-dependent methyltransferase, YraL family {ECO:0000313|EMBL:EFB75037.1}; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
conserved hypothetical protein TIGR00096
L2_037_000M1_scaffold_1890_28
Butyrivibrio crossotus CAG:259, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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23024..23380
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4RZ59_9FIRM
Putative abortive infection protein AbiGI {ECO:0000313|EMBL:CCY77343.1}; TaxID=1263062 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio crossotus CAG:259.;"
hypothetical protein
Displaying 28 items

View Taxonomy