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L2_037_000M1_scaffold_2204

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_000M1_scaffold_2204_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..821
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRW4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB74492.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
diguanylate cyclase (GGDEF) domain
L2_037_000M1_scaffold_2204_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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843..1250
DNA (408bp) protein (136aa)
Putative endoribonuclease L-PSP n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQE1_9FIRM
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:EFB75086.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
endoribonuclease L-PSP
L2_037_000M1_scaffold_2204_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1505..2287)
DNA (783bp) protein (261aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.- 3.6.3.21)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQG8_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB75058.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_037_000M1_scaffold_2204_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2300..2959)
DNA (660bp) protein (220aa)
ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQG9_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EFB75059.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
polar amino acid ABC transporter inner membrane subunit
L2_037_000M1_scaffold_2204_5
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2959..3789)
DNA (831bp) protein (277aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZG42_9FIRM
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:EFQ07823.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L2_037_000M1_scaffold_2204_6
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4279..5298)
DNA (1020bp) protein (340aa)
Dehydrogenase, FMN-dependent n=2 Tax=Clostridiales RepID=B0NE82_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN34015.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
L2_037_000M1_scaffold_2204_7
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5361..6563)
DNA (1203bp) protein (401aa)
Major Facilitator Superfamily n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6PZQ5_9FIRM
Major Facilitator Superfamily {ECO:0000313|EMBL:CDC29933.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Major Facilitator Superfamily.
L2_037_000M1_scaffold_2204_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7036..9639
DNA (2604bp) protein (868aa)
GTP-binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIU9_9FIRM
GTP-binding domain protein {ECO:0000313|EMBL:EFB77458.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
small GTP-binding protein domain
L2_037_000M1_scaffold_2204_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9805..10464
DNA (660bp) protein (220aa)
Response regulator receiver domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIU1_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EFB77449.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_037_000M1_scaffold_2204_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10612..11886
DNA (1275bp) protein (425aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLK6_9FIRM
Signal transduction histidine kinase
L2_037_000M1_scaffold_2204_11
unknown

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11861..12718
DNA (858bp) protein (286aa)

This feature has no annotations

L2_037_000M1_scaffold_2204_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12771..13088)
DNA (318bp) protein (106aa)
Transcriptional regulatory protein, C-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRQ3_9FIRM
Transcriptional regulatory protein, C-terminal domain protein {ECO:0000313|EMBL:EFB74594.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
response regulator
Displaying 12 items

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