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L2_037_000M1_scaffold_2295

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_000M1_scaffold_2295_1
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..2161)
DNA (2160bp) protein (720aa)
CRISPR-associated endonuclease Cas9 {ECO:0000256|HAMAP-Rule:MF_01480}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01480};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
CRISPR-associated protein cas9/csn1, subtype II/nmemi n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RUL1_9FIRM
CRISPR-associated endonuclease, Csn1 family
L2_037_000M1_scaffold_2295_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2408..3310)
DNA (903bp) protein (301aa)
EDD domain protein, DegV family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKA4_9FIRM
EDD domain protein, DegV family {ECO:0000313|EMBL:EFB76914.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
EDD domain protein, DegV family
L2_037_000M1_scaffold_2295_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3307..3816)
DNA (510bp) protein (170aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted rRNA methylase (SpoU class) (EC:2.1.1.-)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKA5_9FIRM
L2_037_000M1_scaffold_2295_4
Firmicutes bacterium CAG:341, Firmicutes, Bacteria

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comp(3955..4311)
DNA (357bp) protein (119aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Firmicutes bacterium CAG:341 RepID=R7BHU9_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDD65107.1}; TaxID=1263019 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:341.;"
hypothetical protein
L2_037_000M1_scaffold_2295_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4316..5146)
DNA (831bp) protein (277aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Pyridoxal kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKA6_9FIRM
hypothetical protein
L2_037_000M1_scaffold_2295_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5373..6533)
DNA (1161bp) protein (387aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EFB76919.1}; EC=1.1.1.290 {ECO:0000313|EMBL:EFB76919.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
4-phosphoerythronate dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJH1_9FIRM
L2_037_000M1_scaffold_2295_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6607..7701)
DNA (1095bp) protein (365aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJH2_9FIRM
L2_037_000M1_scaffold_2295_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8167..8559
DNA (393bp) protein (131aa)
Transcriptional regulator, BlaI/MecI/CopY family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJH4_9FIRM
Transcriptional regulator, BlaI/MecI/CopY family {ECO:0000313|EMBL:EFB76922.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted transcriptional regulator
L2_037_000M1_scaffold_2295_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8578..9372)
DNA (795bp) protein (265aa)
Putative DNA metabolism protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJH5_9FIRM
Putative DNA metabolism protein {ECO:0000313|EMBL:EFB76923.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L2_037_000M1_scaffold_2295_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9351..10715)
DNA (1365bp) protein (455aa)
Putative DNA modification/repair radical SAM protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJH6_9FIRM
Putative DNA modification/repair radical SAM protein {ECO:0000313|EMBL:EFB76924.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted DNA-binding protein with the Helix-hairpin-helix motif
L2_037_000M1_scaffold_2295_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10881..11510)
DNA (630bp) protein (210aa)
DNA-binding helix-turn-helix protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJH7_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFB76925.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SOS-response transcriptional repressors (RecA-mediated autopeptidases)
L2_037_000M1_scaffold_2295_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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11765..12034
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76926.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L2_037_000M1_scaffold_2295_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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12164..12910
DNA (747bp) protein (249aa)
CutC family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJH9_9FIRM
CutC family protein {ECO:0000313|EMBL:EFB76927.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Uncharacterized protein involved in copper resistance
Displaying 13 items

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