ggKbase home page

L2_037_039G1_scaffold_23

Search features with annotation key words

Displaying items 1-30 of 121 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_039G1_scaffold_23_1
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

153..1553
DNA (1401bp) protein (467aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1331671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida H8234.;"
exodeoxyribonuclease n=1 Tax=Pseudomonas sp. S13.1.2 RepID=UPI0003782849
exodeoxyribonuclease
L2_037_039G1_scaffold_23_2
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1557..2384
DNA (828bp) protein (276aa)
Peptidase M23 family protein n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HCH7_PSEPU
peptidase M23 family protein
Peptidase M23 family protein {ECO:0000313|EMBL:BAN56143.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L2_037_039G1_scaffold_23_3
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2799..4472
DNA (1674bp) protein (558aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
leuA; 2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HB58_PSEPU
L2_037_039G1_scaffold_23_4
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4683..5420)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HB07_PSEPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN56145.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L2_037_039G1_scaffold_23_5
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5581..6261)
DNA (681bp) protein (227aa)
keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase (EC:4.1.2.14)
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase {ECO:0000313|EMBL:ABY96932.1}; EC=4.1.2.14 {ECO:0000313|EMBL:ABY96932.1};; TaxID=76869 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (strain GB-1).;"
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase n=1 Tax=Pseudomonas putida (strain GB-1) RepID=B0KRD8_PSEPG
L2_037_039G1_scaffold_23_6
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6279..6992)
DNA (714bp) protein (238aa)
6-phosphogluconolactonase n=2 Tax=Pseudomonas putida RepID=6PGL_PSEPU
pgl; 6-phosphogluconolactonase
6-phosphogluconolactonase {ECO:0000313|EMBL:BAN56147.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L2_037_039G1_scaffold_23_7
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6979..8448)
DNA (1470bp) protein (490aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (Arthrobacter siderocapsulatus).;"
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Pseudomonas putida RepID=Q9EV80_PSEPU
zwf; glucose-6-phosphate 1-dehydrogenase
L2_037_039G1_scaffold_23_8
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8651..9523
DNA (873bp) protein (291aa)
Transcriptional regulator, RpiR family n=2 Tax=Pseudomonas putida RepID=B0KRD5_PSEPG
hexR; RpiR family transcriptional regulator HexR
RpiR family transcriptional regulator HexR {ECO:0000313|EMBL:BAN56149.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L2_037_039G1_scaffold_23_9
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9516..10370)
DNA (855bp) protein (285aa)
Aldose 1-epimerase n=1 Tax=Pseudomonas putida H8234 RepID=R9UZH4_PSEPU
aldose 1-epimerase
Aldose 1-epimerase {ECO:0000313|EMBL:AGN77984.1}; TaxID=1331671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida H8234.;"
L2_037_039G1_scaffold_23_10
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10488..11831)
DNA (1344bp) protein (448aa)
Glucose-inducible porin OprB1 n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HDM5_PSEPU
oprB1; glucose-inducible porin OprB1
Glucose-inducible porin OprB1 {ECO:0000313|EMBL:BAN56151.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L2_037_039G1_scaffold_23_11
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11873..13027)
DNA (1155bp) protein (385aa)
Putative sugar ABC transporter ATP-binding subunit GtsD n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HCA7_PSEPU
gtsD; putative sugar ABC transporter ATP-binding subunit GtsD
Putative sugar ABC transporter ATP-binding subunit GtsD {ECO:0000313|EMBL:BAN56152.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L2_037_039G1_scaffold_23_12
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13031..13876)
DNA (846bp) protein (282aa)
Putative sugar ABC transporter permease protein GtsC n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HCI5_PSEPU
gtsC; putative sugar ABC transporter permease protein GtsC
Putative sugar ABC transporter permease protein GtsC {ECO:0000313|EMBL:BAN56153.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L2_037_039G1_scaffold_23_13
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13869..14777)
DNA (909bp) protein (303aa)
Glucose ABC transporter membrane protein n=8 Tax=Pseudomonas putida RepID=A5VZA5_PSEP1
binding-protein-dependent transport systems inner membrane component
Glucose ABC transporter membrane protein {ECO:0000313|EMBL:ABQ77215.1}; TaxID=351746 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (strain F1 / ATCC 700007).;"
L2_037_039G1_scaffold_23_14
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14922..16208)
DNA (1287bp) protein (429aa)
Putative sugar ABC transporter substrate-binding protein GtsA n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HB17_PSEPU
gtsA; putative sugar ABC transporter substrate-binding protein GtsA
Putative sugar ABC transporter substrate-binding protein GtsA {ECO:0000313|EMBL:BAN56155.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L2_037_039G1_scaffold_23_15
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16354..17808)
DNA (1455bp) protein (485aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
Two-component histidine kinase n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HDN2_PSEPU
two-component histidine kinase
L2_037_039G1_scaffold_23_16
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17789..18514)
DNA (726bp) protein (242aa)
transcriptional regulator n=1 Tax=Pseudomonas sp. S13.1.2 RepID=UPI0002F6BC50
gltR; two-component response regulator GltR
Chemotaxis protein CheY {ECO:0000313|EMBL:AJQ48860.1}; TaxID=1384061 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida S13.1.2.;"
L2_037_039G1_scaffold_23_17
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18644..19606)
DNA (963bp) protein (321aa)
Glucokinase n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HCJ0_PSEPU
glk; glucokinase
Glucokinase {ECO:0000313|EMBL:BAN56158.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L2_037_039G1_scaffold_23_18
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19603..21429)
DNA (1827bp) protein (609aa)
6-phosphogluconate dehydratase n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HB71_PSEPU
6-phosphogluconate dehydratase {ECO:0000313|EMBL:BAN56159.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
edd; 6-phosphogluconate dehydratase
L2_037_039G1_scaffold_23_19
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21694..22695
DNA (1002bp) protein (334aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160, ECO:0000313|EMBL:AJQ48863.1}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1384061 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida S13.1.2.;"
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Pseudomonas sp. S13.1.2 RepID=UPI0002E99D3F
gap; glyceraldehyde-3-phosphate dehydrogenase
L2_037_039G1_scaffold_23_20
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22887..23399
DNA (513bp) protein (171aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=9 Tax=Pseudomonas putida RepID=A5VZ96_PSEP1
RNA polymerase subunit sigma-24
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:AGN77973.1}; TaxID=1331671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida H8234.;"
L2_037_039G1_scaffold_23_21
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23547..24449
DNA (903bp) protein (301aa)
Putative transmembrane sensor n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HCB8_PSEPU
putative transmembrane sensor
Putative transmembrane sensor {ECO:0000313|EMBL:BAN56162.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L2_037_039G1_scaffold_23_22
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24576..27164
DNA (2589bp) protein (863aa)
Putative heme/hemoglobin receptor n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HCJ5_PSEPU
Putative heme/hemoglobin receptor {ECO:0000313|EMBL:BAN56163.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
putative heme/hemoglobin receptor
L2_037_039G1_scaffold_23_23
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27367..27960
DNA (594bp) protein (198aa)
Heme oxygenase n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HB76_PSEPU
hemO; heme oxygenase
Heme oxygenase {ECO:0000313|EMBL:BAN56164.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L2_037_039G1_scaffold_23_24
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28015..28428
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HB28_PSEPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN56165.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L2_037_039G1_scaffold_23_25
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28408..29835)
DNA (1428bp) protein (476aa)
Arginine/ornithine antiporter n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HDP3_PSEPU
arcD; arginine/ornithine antiporter
Arginine/ornithine antiporter {ECO:0000313|EMBL:BAN56166.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L2_037_039G1_scaffold_23_26
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30272..31699
DNA (1428bp) protein (476aa)
Arginine/ornithine antiporter n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HCC4_PSEPU
arcD; arginine/ornithine antiporter
Arginine/ornithine antiporter {ECO:0000313|EMBL:BAN56167.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L2_037_039G1_scaffold_23_27
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31733..32995
DNA (1263bp) protein (421aa)
arcA; arginine deiminase (EC:3.5.3.6)
Arginine deiminase {ECO:0000256|HAMAP-Rule:MF_00242, ECO:0000256|SAAS:SAAS00092997}; Short=ADI {ECO:0000256|HAMAP-Rule:MF_00242};; EC=3.5.3.6 {ECO:0000256|HAMAP-Rule:MF_00242, ECO:0000256|SAAS:SAAS00092997};; Arginine dihydrolase {ECO:0000256|HAMAP-Rule:MF_00242}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
Arginine deiminase n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HCK1_PSEPU
L2_037_039G1_scaffold_23_28
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33065..34075
DNA (1011bp) protein (337aa)
arcB; ornithine carbamoyltransferase ArcB (EC:2.1.3.3)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
Ornithine carbamoyltransferase n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HB81_PSEPU
L2_037_039G1_scaffold_23_29
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34219..35148
DNA (930bp) protein (310aa)
Carbamate kinase n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HB33_PSEPU
arcC; carbamate kinase
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L2_037_039G1_scaffold_23_30
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35205..35573
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2HDP8_PSEPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN56171.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
Displaying items 1-30 of 121 in total

View Taxonomy