ggKbase home page

L2_037_060G1_scaffold_528

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_060G1_scaffold_528_1
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(111..1307)
DNA (1197bp) protein (399aa)
Glycerate kinase I n=4 Tax=Citrobacter RepID=J0VUD5_9ENTR
Glycerate kinase 2 {ECO:0000313|EMBL:ETX67917.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
glycerate kinase
L2_037_060G1_scaffold_528_2
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1322..2212)
DNA (891bp) protein (297aa)
garR; tartronate semialdehyde reductase (EC:1.1.1.60)
Tartronate semialdehyde reductase {ECO:0000313|EMBL:AHY10493.1}; EC=1.1.1.60 {ECO:0000313|EMBL:AHY10493.1};; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
2-hydroxy-3-oxopropionate reductase n=3 Tax=Citrobacter RepID=J0M8B3_9ENTR
L2_037_060G1_scaffold_528_3
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2243..3013)
DNA (771bp) protein (257aa)
5-keto-4-deoxy-D-glucarate aldolase {ECO:0000256|HAMAP-Rule:MF_01291}; Short=KDGluc aldolase {ECO:0000256|HAMAP-Rule:MF_01291};; Short=KDGlucA {ECO:0000256|HAMAP-Rule:MF_01291};; EC=4.1.2.20 {ECO:0000256|HAMAP-Rule:MF_01291};; 2-dehydro-3-deoxy-D-glucarate aldolase {ECO:0000256|HAMAP-Rule:MF_01291}; 2-keto-3-deoxy-D-glucarate aldolase {ECO:0000256|HAMAP-Rule:MF_01291}; 5-dehydro-4-deoxy-D-glucarate aldolase {ECO:0000256|HAMAP-Rule:MF_01291}; Alpha-keto-beta-deoxy-D-glucarate aldolase {ECO:0000256|HAMAP-Rule:MF_01291}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
5-keto-4-deoxy-D-glucarate aldolase n=2 Tax=Enterobacteriaceae RepID=I6GL94_SHIFL
alpha-dehydro-beta-deoxy-D-glucarate aldolase
L2_037_060G1_scaffold_528_4
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3029..4363)
DNA (1335bp) protein (445aa)
D-galactonate transporter n=1 Tax=Citrobacter sp. 30_2 RepID=C1M9T3_9ENTR
galactonate transporter
Galactonate transporter {ECO:0000313|EMBL:AHY10495.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_5
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4770..6341
DNA (1572bp) protein (524aa)
garD; galactarate dehydrogenase (EC:4.2.1.42)
Galactarate dehydrogenase {ECO:0000313|EMBL:AHY10496.1}; EC=4.2.1.42 {ECO:0000313|EMBL:AHY10496.1};; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
Galactarate dehydratase n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BJC9_9ENTR
L2_037_060G1_scaffold_528_6
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6401..7210)
DNA (810bp) protein (270aa)
Transcriptional regulator, DeoR family n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BJC8_9ENTR
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AHY10497.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_7
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7460..8755
DNA (1296bp) protein (432aa)
D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BJC6_9ENTR
D-tagatose-1,6-bisphosphate aldolase subunit KbaZ {ECO:0000256|HAMAP-Rule:MF_01295}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
tagatose-bisphosphate aldolase
L2_037_060G1_scaffold_528_8
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8775..9248
DNA (474bp) protein (158aa)
PTS system, mannose/fructose/sorbose family, IIB component n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BJC5_9ENTR
PTS system N-acetylgalactosamine-specific transporter subunit IIB
PTS system N-acetylgalactosamine-specific transporter subunit IIB {ECO:0000313|EMBL:AHY10499.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_9
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9259..10038
DNA (780bp) protein (260aa)
PTS system sorbose-specific iic component n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BJC4_9ENTR
PTS system N-acetylgalactosamine-specific transporter subunit IIC
PTS system N-acetylgalactosamine-specific transporter subunit IIC {ECO:0000313|EMBL:AHY10500.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_10
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10028..10906
DNA (879bp) protein (293aa)
PTS system, mannose/fructose/sorbose family, IID component n=8 Tax=Citrobacter RepID=C1M9U6_9ENTR
PTS system N-acetylgalactosamine-specific transporter subunit IID
PTS system N-acetylgalactosamine-specific transporter subunit IID {ECO:0000313|EMBL:AHY10501.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_11
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10923..11357
DNA (435bp) protein (145aa)
PTS system fructose subfamily IIA component n=6 Tax=Citrobacter RepID=J1G5T9_9ENTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHY10502.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_12
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11354..12487
DNA (1134bp) protein (378aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BJC1_9ENTR
N-acetylglucosamine-6-phosphate deacetylase
L2_037_060G1_scaffold_528_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12787..13941
DNA (1155bp) protein (385aa)
Sugar isomerase, AgaS family n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BJC0_9ENTR
aldose isomerase
Aldose isomerase {ECO:0000313|EMBL:AHY10504.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_14
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13954..14829
DNA (876bp) protein (292aa)
D-tagatose-1,6-bisphosphate aldolase subunit KbaY {ECO:0000256|HAMAP-Rule:MF_01293}; Short=TBPA {ECO:0000256|HAMAP-Rule:MF_01293};; Short=TagBP aldolase {ECO:0000256|HAMAP-Rule:MF_01293};; EC=4.1.2.40 {ECO:0000256|HAMAP-Rule:MF_01293};; D-tagatose-bisphosphate aldolase class II {ECO:0000256|HAMAP-Rule:MF_01293}; Ketose 1,6-bisphosphate aldolase class II {ECO:0000256|HAMAP-Rule:MF_01293}; Tagatose-bisphosphate aldolase {ECO:0000256|HAMAP-Rule:MF_01293}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
D-tagatose-1,6-bisphosphate aldolase subunit KbaY n=1 Tax=Shigella flexneri 1235-66 RepID=I6GLA7_SHIFL
kbaY; tagatose-bisphosphate aldolase
L2_037_060G1_scaffold_528_15
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15009..15353)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. KTE151 RepID=R8WM82_9ENTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHY10506.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15356..16219)
DNA (864bp) protein (288aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BJB4_9ENTR
16S rRNA methyltransferase
L2_037_060G1_scaffold_528_17
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16283..17752
DNA (1470bp) protein (490aa)
Penicillin-binding protein activator LpoA n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3CI97_CITFR
penicillin-binding protein
Penicillin-binding protein activator LpoA {ECO:0000256|HAMAP-Rule:MF_01890}; Short=PBP activator LpoA {ECO:0000256|HAMAP-Rule:MF_01890};; Flags: Precursor;; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_18
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17692..18237
DNA (546bp) protein (182aa)
Penicillin-binding protein activator LpoA n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BJB3_9ENTR
penicillin-binding protein
Penicillin-binding protein activator LpoA {ECO:0000256|HAMAP-Rule:MF_01890}; Short=PBP activator LpoA {ECO:0000256|HAMAP-Rule:MF_01890};; Flags: Precursor;; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_19
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18195..18590
DNA (396bp) protein (132aa)
UPF0102 protein WEU_03799 n=1 Tax=Citrobacter sp. KTE32 RepID=R8V3C4_9ENTR
hypothetical protein
UPF0102 protein CFNIH1_02935 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_20
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18625..19215
DNA (591bp) protein (197aa)
DnaA initiator-associating protein DiaA n=12 Tax=Enterobacteriaceae RepID=C1M9V4_9ENTR
DnaA initiator-associating protein DiaA
DnaA initiator-associating protein DiaA {ECO:0000256|HAMAP-Rule:MF_01157, ECO:0000256|SAAS:SAAS00014432}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
L2_037_060G1_scaffold_528_21
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19225..19800
DNA (576bp) protein (192aa)
Phospholipid-binding domain protein n=8 Tax=Citrobacter RepID=J1G5J9_9ENTR
membrane protein
Uncharacterized protein {ECO:0000313|EMBL:ETX67944.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
L2_037_060G1_scaffold_528_22
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19894..20529)
DNA (636bp) protein (212aa)
Uncharacterized protein n=2 Tax=Citrobacter RepID=C1M9V6_9ENTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHY10512.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_23
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20658..21176
DNA (519bp) protein (173aa)
Intracellular protease, PfpI family n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BJA8_9ENTR
general stress protein
General stress protein {ECO:0000313|EMBL:AHY10513.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_24
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21156..21599)
DNA (444bp) protein (148aa)
UPF0306 protein CIT292_10749 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BJA7_9ENTR
hypothetical protein
UPF0306 protein CFNIH1_02960 {ECO:0000256|HAMAP-Rule:MF_00764}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_25
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21652..21951
DNA (300bp) protein (100aa)
UPF0213 protein CIT292_10748 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BJA6_9ENTR
GIY-YIG nuclease superfamily protein
UPF0213 protein CFNIH1_02965 {ECO:0000256|HAMAP-Rule:MF_01029}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_26
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21938..22441)
DNA (504bp) protein (168aa)
Abc superfamily transport protein n=6 Tax=Citrobacter RepID=J0M8E2_9ENTR
Putative acetyltransferase YhbS {ECO:0000313|EMBL:GAL45849.1}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
acetyltransferase
L2_037_060G1_scaffold_528_27
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22435..22959)
DNA (525bp) protein (175aa)
SCP-2 sterol transfer family protein n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BJA4_9ENTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHY10517.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_28
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23180..24175
DNA (996bp) protein (332aa)
Peptidase, U32 family {ECO:0000313|EMBL:EFE05768.1}; EC=3.4.-.- {ECO:0000313|EMBL:EFE05768.1};; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
Peptidase, U32 family n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BJA3_9ENTR
protease
L2_037_060G1_scaffold_528_29
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24184..25062
DNA (879bp) protein (293aa)
Peptidase, U32 family n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BJA2_9ENTR
protease
Protease {ECO:0000313|EMBL:AHY10519.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L2_037_060G1_scaffold_528_30
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25250..26257
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QMV2_CITFR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHY10520.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
Displaying items 1-30 of 33 in total

View Taxonomy