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L2_037_240G1_scaffold_140

Search features with annotation key words

Displaying items 1-30 of 116 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_240G1_scaffold_140_1
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..1476)
DNA (1476bp) protein (492aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
DNA ligase n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YP02_9FIRM
putative NAD-dependent DNA ligase
L2_037_240G1_scaffold_140_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1521..2714)
DNA (1194bp) protein (398aa)
Transposase Int-Tn n=1 Tax=Clostridium difficile P28 RepID=T4NG78_CLODI
Transposase Int-Tn {ECO:0000313|EMBL:EQJ54262.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Site-specific recombinase XerD
L2_037_240G1_scaffold_140_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2795..2998)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4NA79_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ54263.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
xis; excisionase
L2_037_240G1_scaffold_140_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3014..3223)
DNA (210bp) protein (70aa)
Helix-turn-helix domain protein n=1 Tax=Clostridium difficile P28 RepID=T4NG61_CLODI
Helix-turn-helix domain protein {ECO:0000313|EMBL:EQJ54264.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L2_037_240G1_scaffold_140_5
Oceanobacillus oncorhynchi, Oceanobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3210..3644)
DNA (435bp) protein (145aa)
Putative RNA polymerase sigma factor, sigma-70 family n=1 Tax=Clostridium ultunense Esp RepID=M1Z834_9CLOT
RNA polymerase sigma factor {ECO:0000313|EMBL:CEI83014.1}; TaxID=545501 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Oceanobacillus.;" source="Oceanobacillus oncorhynchi.;"
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
L2_037_240G1_scaffold_140_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3994..5655
DNA (1662bp) protein (554aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4NFQ5_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ54265.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L2_037_240G1_scaffold_140_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5669..6208
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4NEZ1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ54266.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L2_037_240G1_scaffold_140_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6224..8203
DNA (1980bp) protein (660aa)
Type IV secretory system Conjugative DNA transfer family protein n=1 Tax=Clostridium difficile P28 RepID=T4NG83_CLODI
Type IV secretory system Conjugative DNA transfer family protein {ECO:0000313|EMBL:EQJ54267.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
type IV secretory pathway, VirD4 component
L2_037_240G1_scaffold_140_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8323..8526
DNA (204bp) protein (68aa)
Putative membrane protein n=1 Tax=Clostridium difficile P28 RepID=T4NA84_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQJ54268.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L2_037_240G1_scaffold_140_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8579..8803
DNA (225bp) protein (75aa)
Putative membrane protein n=1 Tax=Clostridium difficile P28 RepID=T4NG66_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQJ54269.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L2_037_240G1_scaffold_140_11
Eggerthella sp. YY7918, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

8822..9262
DNA (441bp) protein (147aa)
Putative uncharacterized protein n=1 Tax=Eggerthella sp. (strain YY7918) RepID=F7UYX2_EEGSY
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK43715.1}; TaxID=502558 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella.;" source="Eggerthella sp. (strain YY7918).;"
L2_037_240G1_scaffold_140_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9249..11948
DNA (2700bp) protein (900aa)
Type IV secretion-system coupling DNA-binding domain protein n=1 Tax=Clostridium difficile P28 RepID=T4NFQ8_CLODI
Type IV secretion-system coupling DNA-binding domain protein {ECO:0000313|EMBL:EQJ54270.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L2_037_240G1_scaffold_140_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11973..13868
DNA (1896bp) protein (632aa)
Putative membrane protein n=1 Tax=Clostridium difficile P28 RepID=T4NEZ5_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQJ54271.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L2_037_240G1_scaffold_140_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13889..14740
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4NG88_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ54272.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L2_037_240G1_scaffold_140_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14771..15847
DNA (1077bp) protein (359aa)
Putative membrane protein n=1 Tax=Clostridium difficile P28 RepID=T4NA89_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQJ54273.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L2_037_240G1_scaffold_140_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15962..17239
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4NEZ9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ54276.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L2_037_240G1_scaffold_140_17
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17331..18404
DNA (1074bp) protein (358aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5XZ08_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:EFV37148.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
hypothetical protein
L2_037_240G1_scaffold_140_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18420..19142
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4NA94_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ54278.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L2_037_240G1_scaffold_140_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19159..19737
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4NG76_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ54279.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L2_037_240G1_scaffold_140_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19779..21248
DNA (1470bp) protein (490aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4NFR6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ54280.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L2_037_240G1_scaffold_140_21
unknown

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21252..21848
DNA (597bp) protein (199aa)

This feature has no annotations

L2_037_240G1_scaffold_140_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21971..22891
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4NG96_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ54282.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L2_037_240G1_scaffold_140_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22872..25061
DNA (2190bp) protein (730aa)
DNA topoisomerase {ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|SAAS:SAAS00046608};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
DNA topoisomerase family protein n=1 Tax=Clostridium difficile P28 RepID=T4NA99_CLODI
DNA topoisomerase type IA central domain protein
L2_037_240G1_scaffold_140_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25065..26084
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4NG81_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ54284.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L2_037_240G1_scaffold_140_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26094..26873
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4NF08_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ54286.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L2_037_240G1_scaffold_140_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26893..28353
DNA (1461bp) protein (487aa)
Helicase C-terminal domain protein n=1 Tax=Clostridium difficile P28 RepID=T4NGA1_CLODI
Helicase C-terminal domain protein {ECO:0000313|EMBL:EQJ54287.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
DNA helicase
L2_037_240G1_scaffold_140_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28366..28671
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4NAA5_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ54288.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L2_037_240G1_scaffold_140_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28777..29262
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4NG86_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ54289.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Hypothetical protein
L2_037_240G1_scaffold_140_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29289..29921
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P28 RepID=T4NFS5_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQJ54290.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L2_037_240G1_scaffold_140_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29969..37732
DNA (7764bp) protein (2588aa)
tRNA synthetases class I (E and Q), anti-codon binding domain protein n=1 Tax=Clostridium difficile P28 RepID=T4NF13_CLODI
tRNA synthetases class I (E and Q), anti-codon binding domain protein {ECO:0000313|EMBL:EQJ54291.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Cna B domain-containing protein
Displaying items 1-30 of 116 in total

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