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L2_037_240G1_scaffold_221

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Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_240G1_scaffold_221_1
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..129
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BFJ0_9FIRM
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDC15523.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L2_037_240G1_scaffold_221_2
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

225..590
DNA (366bp) protein (122aa)
Ethanolamine utilization protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZ33_9FIRM
Ethanolamine utilization protein
Ethanolamine utilization protein {ECO:0000313|EMBL:CBL27043.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_037_240G1_scaffold_221_3
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

602..1036
DNA (435bp) protein (145aa)
Ethanolamine utilization protein n=2 Tax=Clostridiales RepID=D4LZ34_9FIRM
Ethanolamine utilization protein
Ethanolamine utilization protein {ECO:0000313|EMBL:CBL27044.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_037_240G1_scaffold_221_4
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1057..1584
DNA (528bp) protein (176aa)
Ethanolamine utilization protein n=2 Tax=Clostridiales RepID=D4LZ35_9FIRM
Ethanolamine utilization protein
Ethanolamine utilization protein {ECO:0000313|EMBL:CDC16224.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L2_037_240G1_scaffold_221_5
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1689..2558
DNA (870bp) protein (290aa)
Predicted integral membrane protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZ36_9FIRM
Predicted integral membrane protein
Predicted integral membrane protein {ECO:0000313|EMBL:CBL27046.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_037_240G1_scaffold_221_6
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2783..3241
DNA (459bp) protein (153aa)
Transcriptional regulator MarR family n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PCF2_9FIRM
Transcriptional regulator MarR family {ECO:0000313|EMBL:CDC16231.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Transcriptional regulators
L2_037_240G1_scaffold_221_7
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3238..4989
DNA (1752bp) protein (584aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZ37_9FIRM
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBL27047.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
ABC-type multidrug transport system, ATPase and permease components
L2_037_240G1_scaffold_221_8
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4989..6884
DNA (1896bp) protein (632aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZ38_9FIRM
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBL27048.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
ABC-type multidrug transport system, ATPase and permease components
L2_037_240G1_scaffold_221_9
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6959..7342)
DNA (384bp) protein (128aa)
Helix-turn-helix n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZ39_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL27049.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_037_240G1_scaffold_221_10
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7369..7629)
DNA (261bp) protein (87aa)
Helix-turn-helix n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZ40_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL27050.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_037_240G1_scaffold_221_11
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7832..9343
DNA (1512bp) protein (504aa)
propionate CoA-transferase (EC:2.8.3.1)
Acetate CoA-transferase YdiF {ECO:0000256|PIRNR:PIRNR000858}; EC=2.8.3.8 {ECO:0000256|PIRNR:PIRNR000858};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Acetate CoA-transferase YdiF n=2 Tax=Clostridiales RepID=D4LZ46_9FIRM
L2_037_240G1_scaffold_221_12
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9455..9934
DNA (480bp) protein (160aa)
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032, ECO:0000313|EMBL:CBL27057.1};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZ47_9FIRM
L2_037_240G1_scaffold_221_13
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9939..11189
DNA (1251bp) protein (417aa)
3-isopropylmalate dehydratase, large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
3-isopropylmalate dehydratase large subunit n=2 Tax=Clostridiales RepID=D4LZ48_9FIRM
L2_037_240G1_scaffold_221_14
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11249..11743
DNA (495bp) protein (165aa)
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032, ECO:0000313|EMBL:CBL27059.1};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
3-isopropylmalate dehydratase small subunit n=2 Tax=Clostridiales RepID=D4LZ49_9FIRM
L2_037_240G1_scaffold_221_15
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11761..13005
DNA (1245bp) protein (415aa)
3-isopropylmalate dehydratase, large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027, ECO:0000313|EMBL:CBL27060.1};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
3-isopropylmalate dehydratase large subunit n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZ50_9FIRM
L2_037_240G1_scaffold_221_16
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

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13295..14272
DNA (978bp) protein (326aa)
Putative transposase YhgA-like n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XYF5_9FIRM
Putative transposase YhgA-like {ECO:0000313|EMBL:CDA14001.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
Putative transposase, YhgA-like.
L2_037_240G1_scaffold_221_17
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14480..14695
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6E9Y7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA97368.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
sigV; RNA polymerase sigma-70 factor
L2_037_240G1_scaffold_221_18
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14815..16125)
DNA (1311bp) protein (437aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Phosphomethylpyrimidine synthase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q2R2_9FIRM
hydroxymethylpyrimidine synthase
L2_037_240G1_scaffold_221_19
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16427..16936)
DNA (510bp) protein (170aa)
ThiW protein n=2 Tax=Clostridiales RepID=D4LZ53_9FIRM
thiW protein
ThiW protein {ECO:0000313|EMBL:CDC16270.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L2_037_240G1_scaffold_221_20
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17476..18579
DNA (1104bp) protein (368aa)
Transcriptional regulators n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZ54_9FIRM
Transcriptional regulators
Transcriptional regulators {ECO:0000313|EMBL:CBL27064.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_037_240G1_scaffold_221_21
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18604..19308
DNA (705bp) protein (235aa)
L-ribulose 5-phosphate 4-epimerase (EC:5.1.3.4)
L-ribulose 5-phosphate 4-epimerase {ECO:0000313|EMBL:CBL27065.1}; EC=5.1.3.4 {ECO:0000313|EMBL:CBL27065.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L-ribulose 5-phosphate 4-epimerase n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZ55_9FIRM
L2_037_240G1_scaffold_221_22
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19392..20891
DNA (1500bp) protein (500aa)
L-arabinose isomerase {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909}; EC=5.3.1.4 {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909};; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L-arabinose isomerase (EC:5.3.1.4)
L-arabinose isomerase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NXK3_9FIRM
L2_037_240G1_scaffold_221_23
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21058..22044
DNA (987bp) protein (329aa)
diaminopimelate dehydrogenase (EC:1.4.1.16)
Diaminopimelate dehydrogenase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P842_9FIRM
Diaminopimelate dehydrogenase {ECO:0000313|EMBL:CDC16869.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L2_037_240G1_scaffold_221_24
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22176..23777
DNA (1602bp) protein (534aa)
Sugar (Pentulose and hexulose) kinases n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P098_9FIRM
Sugar (pentulose and hexulose) kinases
Sugar (Pentulose and hexulose) kinases {ECO:0000313|EMBL:CDC16870.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L2_037_240G1_scaffold_221_25
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23778..24737)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PEA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC16871.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
delta-lactam-biosynthetic de-N-acetylase
L2_037_240G1_scaffold_221_26
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24882..25538
DNA (657bp) protein (219aa)
Predicted membrane protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q4I7_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CDC16872.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Predicted membrane protein
L2_037_240G1_scaffold_221_27
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25793..26092
DNA (300bp) protein (100aa)
Carbon dioxide concentrating mechanism/carboxysome shell protein n=2 Tax=Clostridiales RepID=D4LZ61_9FIRM
Carbon dioxide concentrating mechanism/carboxysome shell protein
Carbon dioxide concentrating mechanism/carboxysome shell protein {ECO:0000313|EMBL:CBL27071.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_037_240G1_scaffold_221_28
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26176..26457
DNA (282bp) protein (94aa)
Carbon dioxide concentrating mechanism/carboxysome shell protein n=2 Tax=Clostridiales RepID=D4LZ62_9FIRM
Carbon dioxide concentrating mechanism/carboxysome shell protein
Carbon dioxide concentrating mechanism/carboxysome shell protein {ECO:0000313|EMBL:CBL27072.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_037_240G1_scaffold_221_29
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26476..27267
DNA (792bp) protein (264aa)
HAD-superfamily hydrolase, subfamily IIB n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZ63_9FIRM
HAD-superfamily hydrolase, subfamily IIB
HAD-superfamily hydrolase, subfamily IIB {ECO:0000313|EMBL:CBL27073.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_037_240G1_scaffold_221_30
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27468..28529)
DNA (1062bp) protein (354aa)
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
3-dehydroquinate synthase n=1 Tax=Ruminococcus torques L2-14 RepID=D4LZ64_9FIRM
Displaying items 1-30 of 51 in total

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