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L2_037_240G1_scaffold_261

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_240G1_scaffold_261_1
unknown

Not on your lists

comp(3..137)
DNA (135bp) protein (45aa)

This feature has no annotations

L2_037_240G1_scaffold_261_2
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(125..973)
DNA (849bp) protein (283aa)
AP endonuclease, family 2 n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54506.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
xylose isomerase domain-containing protein TIM barrel
L2_037_240G1_scaffold_261_3
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(970..1479)
DNA (510bp) protein (170aa)
HAD phosphatase, family IIIA n=2 Tax=Clostridiales RepID=G9YX11_9FIRM
HAD superfamily phosphatase {ECO:0000313|EMBL:KGF54505.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
HAD family phosphatase
L2_037_240G1_scaffold_261_4
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1567..2343
DNA (777bp) protein (259aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YX12_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32759.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L2_037_240G1_scaffold_261_5
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2408..3025
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX13_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM38047.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
Acetyltransferases
L2_037_240G1_scaffold_261_6
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3088..3270)
DNA (183bp) protein (61aa)
30S ribosomal protein S21 n=3 Tax=Clostridiales RepID=G9YX14_9FIRM
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
rpsU; 30S ribosomal protein S21
L2_037_240G1_scaffold_261_7
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3438..5873)
DNA (2436bp) protein (812aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YR95_9FIRM
L2_037_240G1_scaffold_261_8
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6013..6474
DNA (462bp) protein (154aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2CUX7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI71081.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L2_037_240G1_scaffold_261_9
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6478..6924
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF25_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32764.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L2_037_240G1_scaffold_261_10
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7075..8409)
DNA (1335bp) protein (445aa)
Signal peptide protein, YSIRK family (Fragment) n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU2_9FIRM
Signal peptide protein, YSIRK family {ECO:0000313|EMBL:EHM38201.1}; Flags: Fragment;; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L2_037_240G1_scaffold_261_11
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8406..8915)
DNA (510bp) protein (170aa)
RNA polymerase sigma-70 factor, sigma-E family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54520.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ECF subfamily RNA polymerase sigma-24 subunit
L2_037_240G1_scaffold_261_12
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9028..9387)
DNA (360bp) protein (120aa)
Ribosomal silencing factor RsfS n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF28_9FIRM
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L2_037_240G1_scaffold_261_13
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9400..10887)
DNA (1488bp) protein (496aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU5_9FIRM
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:EHM38204.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
putative LytR family regulatory protein
L2_037_240G1_scaffold_261_14
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10904..12361)
DNA (1458bp) protein (486aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54517.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
putative LytR family regulatory protein
L2_037_240G1_scaffold_261_15
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12361..13569)
DNA (1209bp) protein (403aa)
Nicotinate-nucleotide adenylyltransferase {ECO:0000256|SAAS:SAAS00086517}; EC=2.7.7.18 {ECO:0000256|SAAS:SAAS00086517};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
nadD; nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18)
Nicotinate (Nicotinamide) nucleotide adenylyltransferase n=2 Tax=Clostridiales RepID=H1CF31_9FIRM
L2_037_240G1_scaffold_261_16
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13589..13912)
DNA (324bp) protein (108aa)
RNA-binding protein, YhbY family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54515.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L2_037_240G1_scaffold_261_17
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13955..14545)
DNA (591bp) protein (197aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
rdgB; nucleoside-triphosphatase (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWU9_9FIRM
L2_037_240G1_scaffold_261_18
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14550..15266)
DNA (717bp) protein (239aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
rph; ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH n=3 Tax=Clostridiales RepID=G9YWV0_9FIRM
L2_037_240G1_scaffold_261_19
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15325..16224)
DNA (900bp) protein (300aa)
Signal recognition particle receptor FtsY n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CGN4_9CLOT
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
signal recognition particle-docking protein FtsY
L2_037_240G1_scaffold_261_20
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16248..16745)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CM66_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF54511.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L2_037_240G1_scaffold_261_21
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16991..20560)
DNA (3570bp) protein (1190aa)
Chromosome partition protein Smc n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWV3_9FIRM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
smc; chromosome segregation protein SMC
L2_037_240G1_scaffold_261_22
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21072..21749)
DNA (678bp) protein (226aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2B997_9CLOT
L2_037_240G1_scaffold_261_23
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21815..22048)
DNA (234bp) protein (78aa)
Acyl carrier protein n=3 Tax=Clostridiales RepID=G9YWV6_9FIRM
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
acp; acyl carrier protein
L2_037_240G1_scaffold_261_24
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22153..23175)
DNA (1023bp) protein (341aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
plsX; acyl-ACP--phosphate acyltransferase (EC:2.3.1.-)
Phosphate acyltransferase n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CM61_9CLOT
L2_037_240G1_scaffold_261_25
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23475..23744)
DNA (270bp) protein (90aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2B895_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERI68430.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
transcriptional repressor of PBSX genes
L2_037_240G1_scaffold_261_26
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23799..24053
DNA (255bp) protein (85aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=G9YWV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54598.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L2_037_240G1_scaffold_261_27
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24343..25647)
DNA (1305bp) protein (435aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
trmFO; tRNA methyltransferase (EC:2.1.1.74)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF44_9FIRM
L2_037_240G1_scaffold_261_28
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25669..26286)
DNA (618bp) protein (206aa)
Putative iron-sulfur flavoprotein MJ1083 n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2ARJ2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF54596.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L2_037_240G1_scaffold_261_29
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26308..27021)
DNA (714bp) protein (238aa)
Protein TraX n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YWW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54595.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
TraX family protein
L2_037_240G1_scaffold_261_30
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27100..29430)
DNA (2331bp) protein (777aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
topA; DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CGR7_9CLOT
Displaying items 1-30 of 43 in total

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