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L2_037_240G1_scaffold_342

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Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_240G1_scaffold_342_1
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

315..1943
DNA (1629bp) protein (543aa)
Resolvase, N-terminal domain protein n=2 Tax=Lachnospiraceae RepID=A5ZV57_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC73912.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
putative site-specific recombinase
L2_037_240G1_scaffold_342_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1882..2646
DNA (765bp) protein (255aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PGK7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22730.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_037_240G1_scaffold_342_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2679..3431
DNA (753bp) protein (251aa)
RNA polymerase sigma factor RpoD n=2 Tax=Clostridium RepID=B6FM19_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22731.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_037_240G1_scaffold_342_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3484..4776)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6QL82_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22732.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Hemolysins and related proteins containing CBS domains
L2_037_240G1_scaffold_342_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4928..5839
DNA (912bp) protein (304aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=3 Tax=Clostridium RepID=R6PEH4_9CLOT
L2_037_240G1_scaffold_342_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5843..6715
DNA (873bp) protein (291aa)
UPF0042 nucleotide-binding protein CLONEX_01169 n=2 Tax=Clostridium RepID=B6FM23_9CLOT
Nucleotide-binding protein CLONEX_01169 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted P-loop-containing kinase
L2_037_240G1_scaffold_342_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6699..7694
DNA (996bp) protein (332aa)
Putative sporulation transcription regulator WhiA n=2 Tax=Clostridium RepID=B6FM24_9CLOT
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_037_240G1_scaffold_342_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7687..7944
DNA (258bp) protein (86aa)
HPr-like protein crh n=2 Tax=Clostridium RepID=B6FM25_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22736.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Phosphotransferase System HPr (HPr) Family
L2_037_240G1_scaffold_342_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8008..8967
DNA (960bp) protein (320aa)
Lipid kinase, YegS/Rv2252/BmrU family {ECO:0000313|EMBL:EEA82883.1}; EC=2.7.1.- {ECO:0000313|EMBL:EEA82883.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Lipid kinase, YegS/Rv2252/BmrU family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FM26_9CLOT
conserved protein of unknown function cotranscribed with Bmr (bmrU)
L2_037_240G1_scaffold_342_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8984..10354
DNA (1371bp) protein (457aa)
Transporter n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FM27_9CLOT
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
SNF family Na+-dependent transporter
L2_037_240G1_scaffold_342_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10684..11547
DNA (864bp) protein (288aa)
fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist (EC:4.1.2.13)
Fructose-1,6-bisphosphate aldolase, class II n=2 Tax=Clostridium RepID=B6FM28_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22739.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_037_240G1_scaffold_342_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11686..13809
DNA (2124bp) protein (708aa)
Glutamate--ammonia ligase, catalytic domain protein {ECO:0000313|EMBL:EEA82886.1}; EC=6.3.1.2 {ECO:0000313|EMBL:EEA82886.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Uncharacterized protein related to glutamine synthetase (EC:6.3.1.2)
Glutamate--ammonia ligase, catalytic domain protein n=2 Tax=Clostridium RepID=B6FM29_9CLOT
L2_037_240G1_scaffold_342_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13877..14323
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PW84_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22741.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted membrane protein
L2_037_240G1_scaffold_342_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14576..14761
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QL92_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22742.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_037_240G1_scaffold_342_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14878..16026
DNA (1149bp) protein (383aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FM32_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22743.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted N6-adenine-specific DNA methylase
L2_037_240G1_scaffold_342_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16042..16641
DNA (600bp) protein (200aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=2 Tax=Clostridium RepID=B6FM33_9CLOT
L2_037_240G1_scaffold_342_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16638..17117
DNA (480bp) protein (160aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PGL8_9CLOT
phosphoesterase, MJ0936 family
L2_037_240G1_scaffold_342_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18039..19040)
DNA (1002bp) protein (334aa)
Transcriptional regulators (EC:5.1.1.1)
Transcriptional regulator, LacI family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FM36_9CLOT
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EEA82893.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_037_240G1_scaffold_342_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19287..20528
DNA (1242bp) protein (414aa)
ABC transporter, solute-binding protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FM37_9CLOT
ABC transporter, solute-binding protein {ECO:0000313|EMBL:EEA82894.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L2_037_240G1_scaffold_342_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20544..21920
DNA (1377bp) protein (459aa)
ABC transporter, permease protein n=2 Tax=Clostridium RepID=B6FM38_9CLOT
ABC transporter, permease protein {ECO:0000313|EMBL:EEA82895.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
maltose/maltodextrin transport system permease
L2_037_240G1_scaffold_342_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21923..22795
DNA (873bp) protein (291aa)
ABC transporter, permease protein n=2 Tax=Clostridium RepID=B6FM39_9CLOT
ABC transporter, permease protein {ECO:0000313|EMBL:EEA82896.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L2_037_240G1_scaffold_342_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22811..24736
DNA (1926bp) protein (642aa)
Pullulanase, type I {ECO:0000313|EMBL:EEA82897.1}; EC=3.2.1.41 {ECO:0000313|EMBL:EEA82897.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Pullulanase, type I n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FM40_9CLOT
pullulanase, type I
L2_037_240G1_scaffold_342_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24741..26684
DNA (1944bp) protein (648aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YMX5_9FIRM
Putative glycogen debranching enzyme, archaeal type {ECO:0000313|EMBL:EEA82898.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
glycogen debranching protein
L2_037_240G1_scaffold_342_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26689..28950
DNA (2262bp) protein (754aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Phosphorylase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PE12_9CLOT
glycogen/starch/alpha-glucan phosphorylase
L2_037_240G1_scaffold_342_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28964..30415
DNA (1452bp) protein (484aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase n=2 Tax=Clostridium RepID=B6FM43_9CLOT
L2_037_240G1_scaffold_342_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30433..32196
DNA (1764bp) protein (588aa)
Alpha amylase, catalytic domain protein n=2 Tax=Clostridium RepID=B6FM44_9CLOT
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:EEA82901.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
glycosidase
L2_037_240G1_scaffold_342_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32198..33823
DNA (1626bp) protein (542aa)
Glycosidases (EC:3.2.1.70)
Alpha amylase, catalytic domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FM45_9CLOT
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:EEA82902.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_037_240G1_scaffold_342_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33820..34371
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FM46_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82903.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ABC transporter permease
L2_037_240G1_scaffold_342_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34556..35866
DNA (1311bp) protein (437aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FM47_9CLOT
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EEA82904.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_037_240G1_scaffold_342_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35898..36323
DNA (426bp) protein (142aa)
Hemerythrin HHE cation binding domain protein n=2 Tax=Clostridium RepID=B6FM48_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22551.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hemerythrin-like metal-binding domain
Displaying items 1-30 of 47 in total

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