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L2_037_240G1_scaffold_426

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_240G1_scaffold_426_1
unknown

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3..89
DNA (87bp) protein (29aa)

This feature has no annotations

L2_037_240G1_scaffold_426_2
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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95..448
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGB9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG29479.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
L2_037_240G1_scaffold_426_3
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

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601..1173
DNA (573bp) protein (191aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6J260_9FIRM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDB44337.1}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
N-acetylmuramoyl-L-alanine amidase
L2_037_240G1_scaffold_426_4
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1215..2036)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LYK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS63890.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
ABC-3 protein
L2_037_240G1_scaffold_426_5
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2029..2739)
DNA (711bp) protein (237aa)
Phosphonate-transporting ATPase (EC:3.6.3.28)
ABC transporter, ATP-binding protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6F5_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDS12780.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L2_037_240G1_scaffold_426_6
Turicibacter sanguinis, Turicibacter, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(2736..3677)
DNA (942bp) protein (314aa)
Periplasmic solute binding family protein n=1 Tax=Turicibacter sanguinis PC909 RepID=D4W4E4_9FIRM
Periplasmic solute binding family protein {ECO:0000313|EMBL:EFF64202.1}; TaxID=702450 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Turicibacter.;" source="Turicibacter sanguinis PC909.;"
ABC-type metal ion transport system, periplasmic component/surface adhesin
L2_037_240G1_scaffold_426_7
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3670..4104)
DNA (435bp) protein (145aa)
Transcriptional regulator Fur family n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7B111_9FIRM
Transcriptional regulator Fur family {ECO:0000313|EMBL:CDD54357.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
Fe2+/Zn2+ uptake regulation proteins
L2_037_240G1_scaffold_426_8
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4480..5640
DNA (1161bp) protein (387aa)
amino acid-binding protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00037B56B0
Receptor family ligand-binding protein {ECO:0000313|EMBL:EJF42180.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L2_037_240G1_scaffold_426_9
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5816..6697
DNA (882bp) protein (294aa)
ABC transporter permease n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003790E05
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EJF42174.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
livH1; high-affinity branched-chain amino acid ABC transporter system permease LivH
L2_037_240G1_scaffold_426_10
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6711..7715
DNA (1005bp) protein (335aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0NC55_9CLOT
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EJF42217.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
livM1; high-affinity branched-chain amino acid ABC transporter system permease LivM
L2_037_240G1_scaffold_426_11
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7719..8480
DNA (762bp) protein (254aa)
Branched-chain amino acid ABC transporter n=1 Tax=Clostridium sp. MSTE9 RepID=J0X0P8_9CLOT
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:EJF42141.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
branched-chain amino acid ABC transporter ATPase
L2_037_240G1_scaffold_426_12
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8483..9193
DNA (711bp) protein (237aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYZ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64305.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-)
L2_037_240G1_scaffold_426_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9313..9978
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U616_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO06069.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_037_240G1_scaffold_426_14
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10002..12599
DNA (2598bp) protein (866aa)
protein disaggregation chaperone n=1 Tax=Dehalobacter sp. E1 RepID=UPI0002F98447
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
clpB; Chaperone protein ClpB
L2_037_240G1_scaffold_426_15
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12730..14526
DNA (1797bp) protein (599aa)
Peptidase_C39 like family n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MVX7_CLOSA
peptidase_C39 like family
Peptidase_C39 like family {ECO:0000313|EMBL:AGX44760.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_037_240G1_scaffold_426_16
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14530..15279)
DNA (750bp) protein (250aa)
Bile acid 7-dehydroxylase 1/3 {ECO:0000313|EMBL:EDN77529.1}; EC=1.17.99.5 {ECO:0000313|EMBL:EDN77529.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Bile acid 7-dehydroxylase 1/3 n=3 Tax=Clostridiales RepID=A7B3K3_RUMGN
hypothetical protein
L2_037_240G1_scaffold_426_17
Megamonas hypermegale, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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15528..17141
DNA (1614bp) protein (538aa)
NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain n=1 Tax=Megamonas hypermegale ART12/1 RepID=D4KES6_9FIRM
NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain
NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain {ECO:0000313|EMBL:CBL06873.1}; TaxID=657316 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas hypermegale ART12/1.;"
L2_037_240G1_scaffold_426_18
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17173..18537)
DNA (1365bp) protein (455aa)
UPF0210 protein BN770_01146 n=2 Tax=root RepID=R7I610_9FIRM
UPF0210 protein BN770_01146 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
hypothetical protein
L2_037_240G1_scaffold_426_19
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18549..18821)
DNA (273bp) protein (91aa)
UPF0237 protein BN454_01075 n=1 Tax=Clostridium sp. CAG:1024 RepID=R5ARE8_9CLOT
UPF0237 protein BN454_01075 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
hypothetical protein
L2_037_240G1_scaffold_426_20
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18962..19585)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GLJ4_EUBLK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO36567.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L2_037_240G1_scaffold_426_21
Clostridium autoethanogenum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19582..20445)
DNA (864bp) protein (288aa)
ABC transporter related protein n=1 Tax=Clostridium autoethanogenum DSM 10061 RepID=U5RST8_9CLOT
ABC transporter related protein
ABC transporter related protein {ECO:0000313|EMBL:AGY75662.1}; TaxID=1341692 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium autoethanogenum DSM 10061.;"
L2_037_240G1_scaffold_426_22
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20450..20827)
DNA (378bp) protein (126aa)
Transcriptional regulator, GntR family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF66_9CLOT
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EEG29869.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
GntR family transcriptional regulator
L2_037_240G1_scaffold_426_23
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20998..22218
DNA (1221bp) protein (407aa)
Phospholipid/glycerol acyltransferase n=1 Tax=Clostridium sp. CAG:349 RepID=R6WCG2_9CLOT
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:CDD08803.1}; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
hypothetical protein
L2_037_240G1_scaffold_426_24
unknown

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22281..22511
DNA (231bp) protein (77aa)

This feature has no annotations

L2_037_240G1_scaffold_426_25
Bacillus azotoformans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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22580..23068
DNA (489bp) protein (163aa)
EBSC protein n=1 Tax=Bacillus acidiproducens RepID=UPI00035FD370
Uncharacterized protein {ECO:0000313|EMBL:KEF37751.1}; TaxID=1348973 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus azotoformans MEV2011.;"
ywhH; putative protein YwhH
L2_037_240G1_scaffold_426_26
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23329..23973
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GKH4_EUBLK
hypothetical protein
Riboflavin transporter {ECO:0000256|PIRNR:PIRNR037778}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L2_037_240G1_scaffold_426_27
Brevibacillus borstelensis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(23997..24929)
DNA (933bp) protein (311aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1300222 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus borstelensis AK1.;"
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase n=1 Tax=Brevibacillus borstelensis AK1 RepID=M8E899_9BACL
L2_037_240G1_scaffold_426_28
Clostridium sp. CAG:349, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25014..25760)
DNA (747bp) protein (249aa)
NH(3)-dependent NAD(+) synthetase {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812}; EC=6.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812};; TaxID=1262797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:349.;"
NH(3)-dependent NAD(+) synthetase n=1 Tax=Clostridium sp. CAG:349 RepID=R6WH10_9CLOT
NAD+ synthetase
L2_037_240G1_scaffold_426_29
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25811..27142)
DNA (1332bp) protein (444aa)
glnA; Glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356, ECO:0000313|EMBL:CDM68286.1}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356, ECO:0000313|EMBL:CDM68286.1};; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
Glutamine synthetase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TIU9_9CLOT
L2_037_240G1_scaffold_426_30
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27347..28306)
DNA (960bp) protein (320aa)
UPI0003D5E40C related cluster n=1 Tax=unknown RepID=UPI0003D5E40C
Uncharacterized protein {ECO:0000313|EMBL:ETI92526.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
permease
Displaying items 1-30 of 32 in total

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