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L2_037_240G1_scaffold_657

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_240G1_scaffold_657_1
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..728)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5ARC0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX41726.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
ABC-type antimicrobial peptide transport system, ATPase component
L2_037_240G1_scaffold_657_2
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

973..2343
DNA (1371bp) protein (457aa)
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase n=1 Tax=Clostridium leptum CAG:27 RepID=R6NBE9_9CLOT
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase {ECO:0000313|EMBL:CDC05619.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
L2_037_240G1_scaffold_657_3

Not on your lists

comp(2399..3238)
DNA (840bp) protein (280aa)
putative esterase (EC:3.1.-.-)
Esterase n=1 Tax=uncultured bacterium FLS12 RepID=B8Y562_9BACT
Esterase {ECO:0000313|EMBL:ACL67846.1}; TaxID=651659 species="Bacteria; environmental samples.;" source="uncultured bacterium FLS12.;"
L2_037_240G1_scaffold_657_4
GWF2_Lentisphaerae_44_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(3243..4061)
DNA (819bp) protein (273aa)
hypothetical protein n=1 Tax=Paenibacillus sp. A9 RepID=UPI0003633623
hypothetical protein
Tax=GWF2_Lentisphaerae_44_16_curated
L2_037_240G1_scaffold_657_5
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4351..5334
DNA (984bp) protein (328aa)
fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-1,6-bisphosphate aldolase, class II n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W946_9CLOT
Fructose-1,6-bisphosphate aldolase, class II {ECO:0000313|EMBL:EOQ41363.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
L2_037_240G1_scaffold_657_6
unknown

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comp(5390..5908)
DNA (519bp) protein (173aa)

This feature has no annotations

L2_037_240G1_scaffold_657_7
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6034..6981)
DNA (948bp) protein (316aa)
ROK family protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5KPY7_9CLOT
ROK family protein {ECO:0000313|EMBL:CCY68870.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
ROK family protein
L2_037_240G1_scaffold_657_8
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

7132..8538
DNA (1407bp) protein (469aa)
gndA; NADP+-dependent 6-P-gluconate dehydrogenase (EC:1.1.1.44)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000256|PIRNR:PIRNR000109, ECO:0000256|RuleBase:RU000485}; EC=1.1.1.44 {ECO:0000256|PIRNR:PIRNR000109, ECO:0000256|RuleBase:RU000485};; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LX84_TEPAE
L2_037_240G1_scaffold_657_9
Paenibacillus sp. TCA20, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8596..9027
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Paenibacillus sp. OSY-SE RepID=UPI00030BB6AD
Uncharacterized protein {ECO:0000313|EMBL:GAK38319.1}; TaxID=1499968 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. TCA20.;"
hypothetical protein
L2_037_240G1_scaffold_657_10
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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9128..9940
DNA (813bp) protein (271aa)
Transcriptional regulator, effector binding domain protein n=2 Tax=Oscillibacter RepID=U2S7I4_9FIRM
Transcriptional regulator, effector binding domain protein {ECO:0000313|EMBL:ERK61608.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
MerR family transcriptional regulator
L2_037_240G1_scaffold_657_11
Ruminococcus sp. CAG:724, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10147..11970
DNA (1824bp) protein (608aa)
GTP-binding protein TypA n=1 Tax=Ruminococcus sp. CAG:724 RepID=R5QEF7_9FIRM
GTP-binding protein TypA {ECO:0000313|EMBL:CCZ20636.1}; TaxID=1262966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:724.;"
typA; GTP-binding protein TypA
L2_037_240G1_scaffold_657_12
unknown

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comp(12507..12923)
DNA (417bp) protein (139aa)

This feature has no annotations

L2_037_240G1_scaffold_657_13
Acetonema longum, Acetonema, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

13056..14300
DNA (1245bp) protein (415aa)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; TaxID=1009370 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Acetonema.;" source="Acetonema longum DSM 6540.;"
L-rhamnose isomerase n=1 Tax=Acetonema longum DSM 6540 RepID=F7NEY0_9FIRM
L-rhamnose isomerase
L2_037_240G1_scaffold_657_14
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14336..14881)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6C8F6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA61622.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
hypothetical protein
L2_037_240G1_scaffold_657_15
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14909..15448)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6C8F6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA61622.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
L2_037_240G1_scaffold_657_16
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15531..16106)
DNA (576bp) protein (192aa)
orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00078102}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
Orotate phosphoribosyltransferase n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZXU1_MAHA5
L2_037_240G1_scaffold_657_17
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16119..17033)
DNA (915bp) protein (305aa)
dihydroorotate oxidase B, catalytic subunit (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; Flags: Precursor;; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
Dihydroorotate dehydrogenase n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZXU2_MAHA5
L2_037_240G1_scaffold_657_18
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

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comp(17026..17799)
DNA (774bp) protein (258aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit id=1998925 bin=GWB2_Clostridiales_37_7 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
pyrK; Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit
Tax=GWB2_Clostridiales_37_7_curated
L2_037_240G1_scaffold_657_19
Mahella australiensis, Mahella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17796..21056)
DNA (3261bp) protein (1087aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; Flags: Precursor;; TaxID=697281 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family IV. Incertae Sedis; Mahella.;" source="Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON).;"
Carbamoyl-phosphate synthase large chain n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZXU4_MAHA5
carbamoyl-phosphate synthase large subunit
L2_037_240G1_scaffold_657_20
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21068..22120)
DNA (1053bp) protein (351aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
Carbamoyl-phosphate synthase small chain n=7 Tax=Clostridium thermocellum RepID=A3DE05_CLOTH
carbamoyl-phosphate synthase small subunit
L2_037_240G1_scaffold_657_21
Bifidobacterium adolescentis, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22138..23016)
DNA (879bp) protein (293aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=367928 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC; 11814 / E194a).;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) RepID=A1A1G0_BIFAA
pyrF; orotidine 5'-phosphate decarboxylase
L2_037_240G1_scaffold_657_22
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23020..24309)
DNA (1290bp) protein (430aa)
dihydroorotase (EC:3.5.2.3)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
Dihydroorotase n=1 Tax=Clostridium thermocellum BC1 RepID=U4MNB1_CLOTM
L2_037_240G1_scaffold_657_23
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24306..25226)
DNA (921bp) protein (307aa)
Aspartate carbamoyltransferase {ECO:0000255|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000255|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000255|HAMAP-Rule:MF_00001}; Short=ATCase {ECO:0000255|HAMAP-Rule:MF_00001};; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
Aspartate carbamoyltransferase n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=PYRB_CLOCE
pyrB; aspartate carbamoyltransferase catalytic subunit
L2_037_240G1_scaffold_657_24
unknown

Not on your lists

comp(25223..25396)
DNA (174bp) protein (58aa)

This feature has no annotations

L2_037_240G1_scaffold_657_25
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25593..26759)
DNA (1167bp) protein (389aa)
Cation diffusion facilitator family transporter n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LLD9_9FIRM
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EOS59166.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
cation diffusion facilitator family transporter
L2_037_240G1_scaffold_657_26
Megamonas funiformis, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(26870..27511)
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Megamonas funiformis YIT 11815 RepID=H3K432_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHR39248.1}; TaxID=742816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas funiformis YIT 11815.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L2_037_240G1_scaffold_657_27
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27604..28770)
DNA (1167bp) protein (389aa)
Iron-containing alcohol dehydrogenase n=7 Tax=Clostridium thermocellum RepID=A3DBL3_CLOTH
iron-containing alcohol dehydrogenase
Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:ABN51342.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L2_037_240G1_scaffold_657_28
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28968..29903)
DNA (936bp) protein (312aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVT9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67504.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L2_037_240G1_scaffold_657_29
Coprococcus eutactus CAG:665, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29881..30327)
DNA (447bp) protein (149aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=1263071 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus eutactus CAG:665.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=2 Tax=Coprococcus RepID=A8SUU8_9FIRM
L2_037_240G1_scaffold_657_30
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30623..31183
DNA (561bp) protein (187aa)
Putative manganese efflux pump MntP n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DQY2_CLOS4
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
Predicted membrane protein
Displaying items 1-30 of 32 in total

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