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L2_037_240G1_scaffold_700

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_240G1_scaffold_700_1
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..99)
DNA (99bp) protein (33aa)
Elongation factor Tu n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HKY5_RUBGI
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
L2_037_240G1_scaffold_700_2
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(290..883)
DNA (594bp) protein (198aa)
RNA polymerase sigma-30 factor (Sigma(H)) n=1 Tax=Clostridium sp. CAG:226 RepID=R5B2N1_9CLOT
RNA polymerase sigma-30 factor (Sigma(H)) {ECO:0000313|EMBL:CCX49850.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
RNA polymerase sigma-30 subunit SigH
L2_037_240G1_scaffold_700_3
Blautia sp. CAG:52, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(880..1398)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:52 RepID=R6H646_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB21767.1}; TaxID=1262758 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:52.;"
hypothetical protein
L2_037_240G1_scaffold_700_4
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1404..2159)
DNA (756bp) protein (252aa)
RNA methyltransferase TrmH family group 3 n=1 Tax=Clostridium sp. CAG:352 RepID=R6R5S9_9CLOT
RNA methyltransferase TrmH family group 3 {ECO:0000313|EMBL:CDC38451.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
TrmH family RNA methyltransferase
L2_037_240G1_scaffold_700_5
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2138..2890)
DNA (753bp) protein (251aa)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408};; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
Thymidylate synthase ThyX n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4K9T2_9FIRM
thymidylate synthase, flavin-dependent
L2_037_240G1_scaffold_700_6
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2887..3288)
DNA (402bp) protein (134aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
Mini-ribonuclease 3 n=1 Tax=Clostridium termitidis CT1112 RepID=S0FIP5_9CLOT
RNase3 domain-containing protein
L2_037_240G1_scaffold_700_7
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3299..3985)
DNA (687bp) protein (229aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7D542_9FIRM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDD85495.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
L2_037_240G1_scaffold_700_8
unknown

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comp(4031..4183)
DNA (153bp) protein (51aa)

This feature has no annotations

L2_037_240G1_scaffold_700_9
Clostridium scatologenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4277..5311)
DNA (1035bp) protein (345aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1548 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium scatologenes.;"
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PVY8_9CLOT
metalloendopeptidase, glycoprotease family
L2_037_240G1_scaffold_700_10
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

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comp(5289..6020)
DNA (732bp) protein (244aa)
Putative uncharacterized protein id=3477507 bin=GWF2_Firmicute_51_9 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
integral membrane protein
Tax=GWF2_Firmicutes_51_9_curated
L2_037_240G1_scaffold_700_11
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6030..7118)
DNA (1089bp) protein (363aa)
Aminomethyltransferase {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981};; Glycine cleavage system T protein {ECO:0000256|HAMAP-Rule:MF_00259}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
glycine cleavage system T protein (EC:2.1.2.10)
glycine cleavage system protein T n=1 Tax=Treponema primitia RepID=UPI0002554CA0
L2_037_240G1_scaffold_700_12
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7268..8659)
DNA (1392bp) protein (464aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AIK5_9CLOT
L2_037_240G1_scaffold_700_13
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8646..9356)
DNA (711bp) protein (237aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
Serine acetyltransferase n=1 Tax=Clostridium sp. CAG:1024 RepID=R5APP3_9CLOT
serine O-acetyltransferase
L2_037_240G1_scaffold_700_14
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9799..10875
DNA (1077bp) protein (359aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=2 Tax=Lachnospiraceae RepID=F7JL60_9FIRM
L2_037_240G1_scaffold_700_15
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10877..12397
DNA (1521bp) protein (507aa)
Putative RNA methylase n=1 Tax=Clostridium sp. CAG:226 RepID=R5B782_9CLOT
Putative RNA methylase {ECO:0000313|EMBL:CCX51133.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
RNA methylase
L2_037_240G1_scaffold_700_16
Peptostreptococcaceae bacterium oral taxon 113, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12440..13051)
DNA (612bp) protein (204aa)
DNA-binding helix-turn-helix protein n=1 Tax=Peptostreptococcaceae bacterium oral taxon 113 str. W5053 RepID=U2JRL0_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERJ82657.1}; TaxID=1321784 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium oral taxon 113 str. W5053.;"
Predicted transcriptional regulators
L2_037_240G1_scaffold_700_17
unknown

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comp(13210..13764)
DNA (555bp) protein (185aa)

This feature has no annotations

L2_037_240G1_scaffold_700_18
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13829..15418)
DNA (1590bp) protein (530aa)
Uncharacterized protein n=1 Tax=Clostridium intestinale URNW RepID=U2Q117_9CLOT
hypothetical protein
Tax=BJP_IG2157_Clostridiales_52_13
L2_037_240G1_scaffold_700_19
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15473..16453)
DNA (981bp) protein (327aa)
YbbR family protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AG43_9CLOT
YbbR family protein {ECO:0000313|EMBL:CCX41733.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
hypothetical protein
L2_037_240G1_scaffold_700_20
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16450..17286)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:226 RepID=R5BFW8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX50341.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
hypothetical protein
L2_037_240G1_scaffold_700_21
unknown

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comp(17320..17565)
DNA (246bp) protein (82aa)

This feature has no annotations

L2_037_240G1_scaffold_700_22
unknown

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comp(17818..17970)
DNA (153bp) protein (51aa)

This feature has no annotations

L2_037_240G1_scaffold_700_23
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17967..19151)
DNA (1185bp) protein (395aa)
Germination protein Ger(X)C family n=1 Tax=Clostridium sp. CAG:226 RepID=R5BBV4_9CLOT
Germination protein Ger(X)C family {ECO:0000313|EMBL:CCX50337.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
spore germination B3 GerAC like
L2_037_240G1_scaffold_700_24
BJP_IG2069_Clostridiales_48_15, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19148..19537)
DNA (390bp) protein (130aa)
spore germination protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E304DE
Tax=BJP_IG2069_Clostridiales_48_15
Displaying 24 items

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