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L2_037_240G1_scaffold_774

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_240G1_scaffold_774_1
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..99)
DNA (99bp) protein (33aa)
Elongation factor Tu n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HKY5_RUBGI
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
L2_037_240G1_scaffold_774_2
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(156..2219)
DNA (2064bp) protein (688aa)
Elongation factor G n=1 Tax=Clostridium papyrosolvens C7 RepID=U4R541_9CLOT
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens C7.;"
translation elongation factor EF-G
L2_037_240G1_scaffold_774_3
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2316..2786)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7IHZ4_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
30S ribosomal protein S7
L2_037_240G1_scaffold_774_4
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2857..3234)
DNA (378bp) protein (126aa)
30S ribosomal protein S12 n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AG98_9CLOT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
rpsL; 30S ribosomal protein S12
L2_037_240G1_scaffold_774_5
Geobacillus kaustophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3299..3547)
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Alicyclobacillus pohliae RepID=UPI00035F6D60
ribosomal protein L7Ae/L30e/S12e/Gadd45
Putative ribosomal protein L7Ae-like {ECO:0000256|HAMAP-Rule:MF_00574}; TaxID=1337888 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus kaustophilus GBlys.;"
L2_037_240G1_scaffold_774_6
unknown

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comp(3609..4400)
DNA (792bp) protein (264aa)

This feature has no annotations

L2_037_240G1_scaffold_774_7
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4422..8048)
DNA (3627bp) protein (1209aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Clostridium sp. CAG:226 RepID=R5B3Y2_9CLOT
Tax=BJP_IG2157_Clostridiales_52_13
L2_037_240G1_scaffold_774_8
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8042..11617)
DNA (3576bp) protein (1192aa)
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45).;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LUM2_CLOCD
L2_037_240G1_scaffold_774_9
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11625..11822)
DNA (198bp) protein (66aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium sp. CAG:226 RepID=R5BFR5_9CLOT
DNA-directed RNA polymerase subunit beta
L2_037_240G1_scaffold_774_10
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12124..13269)
DNA (1146bp) protein (382aa)
PilT protein domain protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GIQ0_EUBLK
PilT protein domain-containing protein
PilT protein domain protein {ECO:0000313|EMBL:ADO35535.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L2_037_240G1_scaffold_774_11
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(13320..13790)
DNA (471bp) protein (157aa)
RNA polymerase-binding transcription factor CarD n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LRW0_TEPAE
carD family transcriptional regulator
RNA polymerase-binding transcription factor CarD {ECO:0000313|EMBL:CCP27179.1}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
L2_037_240G1_scaffold_774_12
Bacillus simplex, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(13854..15086)
DNA (1233bp) protein (411aa)
DNA repair protein RadA n=1 Tax=Bacillus sp. AP8 RepID=UPI00037F1343
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1478 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus simplex.;"
DNA repair protein RadA
L2_037_240G1_scaffold_774_13
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15258..16412)
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:138 RepID=R6BCZ4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA51247.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
L2_037_240G1_scaffold_774_14
Clostridium sp. SY8519, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16449..16940)
DNA (492bp) protein (164aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1042156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain SY8519).;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Clostridium sp. (strain SY8519) RepID=F7V5B9_CLOSS
IspF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
L2_037_240G1_scaffold_774_15
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16937..17179)
DNA (243bp) protein (81aa)
S4-domain-containing heat shock protein n=1 Tax=Firmicutes bacterium CAG:475 RepID=R7BSP8_9FIRM
RNA-binding S4 domain-containing protein
RNA-binding S4 domain protein {ECO:0000313|EMBL:ABW20167.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
L2_037_240G1_scaffold_774_16
Geobacillus sp. G1w1, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(17300..17572)
DNA (273bp) protein (91aa)
DNA-binding protein HU n=16 Tax=Bacillaceae RepID=DBH_BACCA
histone family protein DNA-binding protein
DNA-binding protein {ECO:0000313|EMBL:KFX32664.1}; TaxID=1430331 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. G1w1.;"
L2_037_240G1_scaffold_774_17
Fervidicella metallireducens, Fervidicella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17661..19121)
DNA (1461bp) protein (487aa)
hypothetical protein n=1 Tax=Desulfurispora thermophila RepID=UPI00036C0249
Nucleotide pyrophosphohydrolase {ECO:0000313|EMBL:EYE87901.1}; TaxID=1403537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Fervidicella.;" source="Fervidicella metallireducens AeB.;"
MazG family protein
L2_037_240G1_scaffold_774_18
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19121..20737)
DNA (1617bp) protein (539aa)
Polysaccharide biosynthesis protein n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AJD6_9CLOT
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:CCX41949.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
spoVB; stage V sporulation protein B
L2_037_240G1_scaffold_774_19
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20852..21406)
DNA (555bp) protein (185aa)
Transcriptional regulator AbrB family n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7ICT7_9FIRM
Transcriptional regulator AbrB family {ECO:0000313|EMBL:CDE49435.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
AbrB family transcriptional regulator
L2_037_240G1_scaffold_774_20
Cyanothece sp. ATCC 51142, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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21618..23108
DNA (1491bp) protein (497aa)
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I n=2 Tax=Cyanothece RepID=G6GMN8_9CHRO
putative phosphoglucomutases
Putative phosphoglucomutases {ECO:0000313|EMBL:ACB54030.1}; TaxID=43989 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain ATCC 51142).;"
L2_037_240G1_scaffold_774_21
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

Not on your lists

comp(23167..24651)
DNA (1485bp) protein (495aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6V7B1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC92960.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
L2_037_240G1_scaffold_774_22
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24734..28213)
DNA (3480bp) protein (1160aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=868595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 /; CO-1-SRB).;"
Transcription-repair-coupling factor n=1 Tax=Desulfotomaculum nigrificans DSM 574 RepID=F0DIN2_9FIRM
transcription-repair coupling factor
L2_037_240G1_scaffold_774_23
Pseudoramibacter alactolyticus, Pseudoramibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28230..28793)
DNA (564bp) protein (188aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=887929 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Pseudoramibacter.;" source="Pseudoramibacter alactolyticus ATCC 23263.;"
Peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Pseudoramibacter alactolyticus ATCC 23263 RepID=E6MGM7_9FIRM
L2_037_240G1_scaffold_774_24
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

comp(28795..29856)
DNA (1062bp) protein (354aa)
glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase (EC:2.7.7.23)
Bifunctional protein GlmU n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AGT4_9FIRM
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
Displaying 24 items

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