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L2_037_371G1_scaffold_1239

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_037_371G1_scaffold_1239_1
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

605..4024
DNA (3420bp) protein (1140aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBP1_9CLOT
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EEG51285.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
hypothetical protein
L2_037_371G1_scaffold_1239_2
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4114..4509
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBP0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG51284.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
hypothetical protein
L2_037_371G1_scaffold_1239_3
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4487..4882
DNA (396bp) protein (132aa)
Dinitrogenase iron-molybdenum cofactor n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBN9_9CLOT
Dinitrogenase iron-molybdenum cofactor {ECO:0000313|EMBL:EEG51283.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
hypothetical protein
L2_037_371G1_scaffold_1239_4
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5049..5540
DNA (492bp) protein (164aa)
RNA polymerase sigma factor SigV n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBN8_9CLOT
RNA polymerase sigma factor SigV {ECO:0000313|EMBL:EEG51282.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
RNA polymerase, sigma subunit, SigV
L2_037_371G1_scaffold_1239_5
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5537..6412
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBN7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG51281.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Protein of unknown function (DUF3298).
L2_037_371G1_scaffold_1239_6
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6570..7193
DNA (624bp) protein (208aa)
Transcriptional regulator, TetR family n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBN6_9CLOT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEG51280.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
transcriptional regulator
L2_037_371G1_scaffold_1239_7
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7190..8578
DNA (1389bp) protein (463aa)
MATE efflux family protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBN5_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:EEG51279.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
putative efflux protein, MATE family
L2_037_371G1_scaffold_1239_8
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8780..9349)
DNA (570bp) protein (190aa)
Nitroreductase family protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBN0_9CLOT
Nitroreductase family protein {ECO:0000313|EMBL:EEG51274.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
nitroreductase
L2_037_371G1_scaffold_1239_9
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9379..9765)
DNA (387bp) protein (129aa)
Iron dependent repressor DNA binding domain protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBM9_9CLOT
Iron dependent repressor DNA binding domain protein {ECO:0000313|EMBL:EEG51273.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Transcriptional regulator
L2_037_371G1_scaffold_1239_10
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9984..10181
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBM8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG51272.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
hypothetical protein
L2_037_371G1_scaffold_1239_11
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10261..11232
DNA (972bp) protein (324aa)
Exonuclease n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBM7_9CLOT
Exonuclease {ECO:0000313|EMBL:EEG51271.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Exonuclease RNase T and DNA polymerase III
L2_037_371G1_scaffold_1239_12
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11338..12033)
DNA (696bp) protein (232aa)
Response regulator receiver domain protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBM6_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:EEG51270.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
winged helix family two component transcriptional regulator
L2_037_371G1_scaffold_1239_13
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12023..13135)
DNA (1113bp) protein (371aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBM5_9CLOT
integral membrane sensor signal transduction histidine kinase
L2_037_371G1_scaffold_1239_14
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13209..14915)
DNA (1707bp) protein (569aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBM4_9CLOT
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EEG51268.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
L2_037_371G1_scaffold_1239_15
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15016..15708)
DNA (693bp) protein (231aa)
TIGR01906 family protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBM3_9CLOT
TIGR01906 family protein {ECO:0000313|EMBL:EEG51267.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
integral membrane protein TIGR01906
L2_037_371G1_scaffold_1239_16
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15792..16199)
DNA (408bp) protein (136aa)
ATP synthase epsilon chain n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBM2_9CLOT
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
ATP synthase F1 subunit epsilon
L2_037_371G1_scaffold_1239_17
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16212..17618)
DNA (1407bp) protein (469aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
ATP synthase F1 subcomplex beta subunit (EC:3.6.3.14)
ATP synthase subunit beta n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBM1_9CLOT
L2_037_371G1_scaffold_1239_18
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17687..18568)
DNA (882bp) protein (294aa)
ATP synthase gamma chain n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBM0_9CLOT
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
ATP synthase F1 subunit gamma
L2_037_371G1_scaffold_1239_19
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18577..20082)
DNA (1506bp) protein (502aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
ATP synthase subunit alpha n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBL9_9CLOT
ATP synthase F1 subunit alpha
L2_037_371G1_scaffold_1239_20
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20088..20591)
DNA (504bp) protein (168aa)
ATP synthase subunit delta n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBL8_9CLOT
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
ATP synthase F1 subunit delta
L2_037_371G1_scaffold_1239_21
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20572..21072)
DNA (501bp) protein (167aa)
ATP synthase subunit b n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBL7_9CLOT
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398, ECO:0000256|RuleBase:RU003849}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
ATP synthase F0 subunit B
L2_037_371G1_scaffold_1239_22
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21097..21321)
DNA (225bp) protein (75aa)
ATP synthase F0 subcomplex C subunit (EC:3.6.3.14)
ATP synthase F0, C subunit n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBL6_9CLOT
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
L2_037_371G1_scaffold_1239_23
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21414..22145)
DNA (732bp) protein (244aa)
ATP synthase subunit a n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DBL5_9CLOT
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
ATP synthase F0 subunit A
Displaying 23 items

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