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L2_038_000M1_scaffold_21

Search features with annotation key words

Displaying items 1-30 of 322 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_038_000M1_scaffold_21_1

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comp(1..177)
DNA (177bp) protein (59aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1UKL2_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC72011.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_038_000M1_scaffold_21_2
Oidiodendron maius, Oidiodendron, Leotiomycetes, Ascomycota, Fungi

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comp(236..640)
DNA (405bp) protein (135aa)
Chromosome 7 SCAF15042, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4RIP0_TETNG
Uncharacterized protein {ECO:0000313|EMBL:KIN00542.1}; TaxID=913774 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Leotiomycetes incertae sedis; Myxotrichaceae; mitosporic Myxotrichaceae; Oidiodendron.;" source="Oidiodendron maius Zn.;"
L2_038_000M1_scaffold_21_3
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(722..2788)
DNA (2067bp) protein (689aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Topoisomerase IA (EC:5.99.1.2)
DNA topoisomerase n=2 Tax=root RepID=R7C9K0_9CLOT
L2_038_000M1_scaffold_21_4
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2800..3441)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CA07_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74750.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_038_000M1_scaffold_21_5
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3524..4762)
DNA (1239bp) protein (413aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9E6_9CLOT
L2_038_000M1_scaffold_21_6
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4797..6068)
DNA (1272bp) protein (424aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBU5_9CLOT
L2_038_000M1_scaffold_21_7
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6087..6710)
DNA (624bp) protein (208aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAM2_9CLOT
L2_038_000M1_scaffold_21_8
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6704..7735)
DNA (1032bp) protein (344aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9J4_9CLOT
L2_038_000M1_scaffold_21_9
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7800..10358)
DNA (2559bp) protein (853aa)
Putative phage head-tail adaptor n=1 Tax=Clostridium sp. CAG:62 RepID=R7CA02_9CLOT
Putative phage head-tail adaptor {ECO:0000313|EMBL:CDD74745.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
type 1 dockerin
L2_038_000M1_scaffold_21_10
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10527..11504
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9E1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74744.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_038_000M1_scaffold_21_11
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11558..11911)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBU0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74743.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L2_038_000M1_scaffold_21_12
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11930..13348)
DNA (1419bp) protein (473aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Cysteine--tRNA ligase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAL8_9CLOT
cysteinyl-tRNA synthetase
L2_038_000M1_scaffold_21_13
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13437..15077)
DNA (1641bp) protein (547aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9I9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74741.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_038_000M1_scaffold_21_14
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15077..16615)
DNA (1539bp) protein (513aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9Z7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74740.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
ABC-type transport system involved in multi-copper enzyme maturation, permease component
L2_038_000M1_scaffold_21_15
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16639..17538)
DNA (900bp) protein (300aa)
Putative membrane protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9D6_9CLOT
Putative membrane protein {ECO:0000313|EMBL:CDD74739.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_038_000M1_scaffold_21_16
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17540..18526)
DNA (987bp) protein (329aa)
ABC-type multidrug transport system ATPase component n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBT8_9CLOT
ABC-type multidrug transport system ATPase component {ECO:0000313|EMBL:CDD74738.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
ABC-type multidrug transport system, ATPase component
L2_038_000M1_scaffold_21_17
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18690..19718
DNA (1029bp) protein (343aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAL6_9CLOT
L2_038_000M1_scaffold_21_18
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19713..20273)
DNA (561bp) protein (187aa)
Integral membrane protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9I4_9CLOT
Integral membrane protein {ECO:0000313|EMBL:CDD74736.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L2_038_000M1_scaffold_21_19
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20328..20873)
DNA (546bp) protein (182aa)
NUDIX hydrolase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9Z0_9CLOT
NUDIX hydrolase {ECO:0000313|EMBL:CDD74735.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
NUDIX hydrolase
L2_038_000M1_scaffold_21_20
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20900..22264)
DNA (1365bp) protein (455aa)
UPF0210 protein BN737_00978 n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9D3_9CLOT
UPF0210 protein BN737_00978 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_038_000M1_scaffold_21_21
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22289..22561)
DNA (273bp) protein (91aa)
UPF0237 protein BN737_00977 n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBT3_9CLOT
UPF0237 protein BN737_00977 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_038_000M1_scaffold_21_22
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22599..23396)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAL2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74732.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Metal-dependent hydrolases of the beta-lactamase superfamily I
L2_038_000M1_scaffold_21_23
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23428..25200)
DNA (1773bp) protein (591aa)
Diguanylate cyclase with GAF sensor n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9H5_9CLOT
Diguanylate cyclase with GAF sensor {ECO:0000313|EMBL:CDD74731.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
GAF sensor-containing diguanylate cyclase
L2_038_000M1_scaffold_21_24
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25213..27387)
DNA (2175bp) protein (725aa)
Cell division protein FtsA n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9Y1_9CLOT
Cell division protein FtsA {ECO:0000313|EMBL:CDD74730.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
cell division protein FtsA
L2_038_000M1_scaffold_21_25
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27428..28018)
DNA (591bp) protein (197aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9B9_9CLOT
L2_038_000M1_scaffold_21_26
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28036..30735)
DNA (2700bp) protein (900aa)
DNA polymerase {ECO:0000256|RuleBase:RU004460}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU004460};; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
DNA polymerase I (EC:2.7.7.7)
DNA polymerase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBS4_9CLOT
L2_038_000M1_scaffold_21_27
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30749..33196)
DNA (2448bp) protein (816aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAK1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74727.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_038_000M1_scaffold_21_28
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34002..35345)
DNA (1344bp) protein (448aa)
Transglutaminase-like predicted protease domain fused ChW-repeats and cell-adhesion domain n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9E5_9CLOT
Transglutaminase-like predicted protease domain fused ChW-repeats and cell-adhesion domain {ECO:0000313|EMBL:CDD74726.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Ig domain-containing protein
L2_038_000M1_scaffold_21_29
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35342..36790)
DNA (1449bp) protein (483aa)
Polyphosphate:AMP phosphotransferase (EC:2.7.4.-)
Polyphosphate:AMP phosphotransferase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9V5_9CLOT
Polyphosphate:AMP phosphotransferase {ECO:0000313|EMBL:CDD74725.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L2_038_000M1_scaffold_21_30
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36806..37258)
DNA (453bp) protein (151aa)
NUDIX hydrolase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C993_9CLOT
NUDIX hydrolase {ECO:0000313|EMBL:CDD74724.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
NUDIX hydrolase
Displaying items 1-30 of 322 in total

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