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L2_038_000M1_scaffold_57

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Displaying items 1-30 of 150 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_038_000M1_scaffold_57_1
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

105..482
DNA (378bp) protein (126aa)
Response regulator receiver domain protein (CheY-like) n=1 Tax=Roseburia sp. CAG:18 RepID=R5VDF6_9FIRM
Response regulator receiver domain protein (CheY-like) {ECO:0000313|EMBL:CCZ78812.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
L2_038_000M1_scaffold_57_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

488..1384
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKI7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78813.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_038_000M1_scaffold_57_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1457..2200)
DNA (744bp) protein (248aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.21)
Polar amino acid ABC transporter n=1 Tax=Roseburia sp. CAG:18 RepID=R5USX5_9FIRM
Polar amino acid ABC transporter {ECO:0000313|EMBL:CCZ78814.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L2_038_000M1_scaffold_57_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2190..2876)
DNA (687bp) protein (229aa)
Amine acid ABC transporter permease protein 3-TM region His/Glu/Gln/Arg/opine family n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL91_9FIRM
Amine acid ABC transporter permease protein 3-TM region His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:CCZ78815.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
amino acid ABC transporter permease
L2_038_000M1_scaffold_57_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2897..3691)
DNA (795bp) protein (265aa)
Polar amino acid ABC transporter n=1 Tax=Roseburia sp. CAG:18 RepID=R5V5T5_9FIRM
Polar amino acid ABC transporter {ECO:0000313|EMBL:CCZ78816.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L2_038_000M1_scaffold_57_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3719..5209)
DNA (1491bp) protein (497aa)
Threonine synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VDG1_9FIRM
Threonine synthase {ECO:0000313|EMBL:CCZ78817.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
threonine synthase
L2_038_000M1_scaffold_57_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5340..6140
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKJ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78818.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_038_000M1_scaffold_57_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6167..6655)
DNA (489bp) protein (163aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Roseburia sp. CAG:18 RepID=R5USY2_9FIRM
leuD; 3-isopropylmalate dehydratase small subunit
L2_038_000M1_scaffold_57_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6689..7951)
DNA (1263bp) protein (421aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
3-isopropylmalate dehydratase, large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Roseburia sp. CAG:18 RepID=R5UL97_9FIRM
L2_038_000M1_scaffold_57_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8088..8996
DNA (909bp) protein (303aa)
Transcriptional regulator LysR family n=1 Tax=Roseburia sp. CAG:18 RepID=R5V5U0_9FIRM
Transcriptional regulator LysR family {ECO:0000313|EMBL:CCZ78821.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
transcriptional regulator, LysR family
L2_038_000M1_scaffold_57_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8993..9760
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VDG6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78822.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_038_000M1_scaffold_57_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9749..10510)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UKJ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78823.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_038_000M1_scaffold_57_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10642..13059)
DNA (2418bp) protein (806aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIK0_9FIRM
L2_038_000M1_scaffold_57_14
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13275..14300)
DNA (1026bp) protein (342aa)
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Ketol-acid reductoisomerase n=2 Tax=Eubacterium rectale RepID=D4JPE5_9FIRM
L2_038_000M1_scaffold_57_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14365..14865)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79885.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
acetolactate synthase 3 regulatory subunit
L2_038_000M1_scaffold_57_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14994..15395)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVY4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79884.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_038_000M1_scaffold_57_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15410..16582)
DNA (1173bp) protein (391aa)
Dockerin type 1 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNM4_9FIRM
Dockerin type 1 {ECO:0000313|EMBL:CCZ79883.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Glycosidases
L2_038_000M1_scaffold_57_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16707..18191)
DNA (1485bp) protein (495aa)
Alpha-L-fucosidase (EC:3.2.1.51)
Alpha-L-fucosidase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BP83_9FIRM
Alpha-L-fucosidase {ECO:0000313|EMBL:CDA55062.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L2_038_000M1_scaffold_57_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18133..18645)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79882.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_038_000M1_scaffold_57_20
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18742..20958)
DNA (2217bp) protein (739aa)
beta-glucosidase (EC:3.2.1.21)
Glycosyl hydrolase family 3 N-terminal domain protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VC20_9CLOT
Glycosyl hydrolase family 3 N-terminal domain protein {ECO:0000313|EMBL:EDO58892.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
L2_038_000M1_scaffold_57_21
Firmicutes bacterium CAG:95, Firmicutes, Bacteria

Not on your lists

comp(20981..23317)
DNA (2337bp) protein (779aa)
Alpha-glucosidases family 31 of glycosyl hydrolases n=1 Tax=Firmicutes bacterium CAG:95 RepID=R7N4H8_9FIRM
Alpha-glucosidases family 31 of glycosyl hydrolases {ECO:0000313|EMBL:CDF08389.1}; TaxID=1262988 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:95.;"
Alpha-glucosidases, family 31 of glycosyl hydrolases
L2_038_000M1_scaffold_57_22
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23490..25268
DNA (1779bp) protein (593aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:100 RepID=R7R2N4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF44378.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
hypothetical protein
L2_038_000M1_scaffold_57_23
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25286..26836
DNA (1551bp) protein (517aa)
Two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FNN4_9CLOT
Two component transcriptional regulator, AraC family protein {ECO:0000313|EMBL:EMS70744.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
L2_038_000M1_scaffold_57_24
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26908..28686)
DNA (1779bp) protein (593aa)
Extracellular solute-binding protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HXF6_9FIRM
Extracellular solute-binding protein {ECO:0000313|EMBL:CCY32839.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L2_038_000M1_scaffold_57_25
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28746..29648)
DNA (903bp) protein (301aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K7R7_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EGN41367.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L2_038_000M1_scaffold_57_26
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29664..30578)
DNA (915bp) protein (305aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K7R8_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EGN41368.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L2_038_000M1_scaffold_57_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30840..31967)
DNA (1128bp) protein (376aa)
Esterase/lipase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L273_9FIRM
Esterase/lipase
Esterase/lipase {ECO:0000313|EMBL:CBL13713.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L2_038_000M1_scaffold_57_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32042..33220)
DNA (1179bp) protein (393aa)
RNA polymerase sigma factor SigA n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP70_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
sigma-70 family RNA polymerase sigma factor
L2_038_000M1_scaffold_57_29
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33278..33496)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90A5 RepID=R0ANJ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOS82042.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
conserved hypothetical protein TIGR02687
L2_038_000M1_scaffold_57_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33507..33944)
DNA (438bp) protein (146aa)
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGJ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79877.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Displaying items 1-30 of 150 in total

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