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L2_038_000M1_scaffold_93

Search features with annotation key words

Displaying items 1-30 of 124 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_038_000M1_scaffold_93_1
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

216..851
DNA (636bp) protein (212aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
sip1; Signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TEU8_9FIRM
L2_038_000M1_scaffold_93_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

848..1417
DNA (570bp) protein (190aa)
sip2; Signal peptidase I (EC:3.4.21.89)
Signal peptidase I {ECO:0000256|RuleBase:RU362042, ECO:0000313|EMBL:CCO04822.1}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042, ECO:0000313|EMBL:CCO04822.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Signal peptidase I n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6D8_9FIRM
L2_038_000M1_scaffold_93_3
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1438..2334
DNA (897bp) protein (299aa)
Ribosome biogenesis GTPase A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SYZ2_9FIRM
conserved hypothetical protein
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_038_000M1_scaffold_93_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2336..2950
DNA (615bp) protein (205aa)
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Ribonuclease HII n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T9J4_9FIRM
L2_038_000M1_scaffold_93_5
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2940..3320
DNA (381bp) protein (127aa)
UPF0102 protein BN714_00216 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2F8_9FIRM
UPF0102 protein BN714_00216 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L2_038_000M1_scaffold_93_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3469..4959
DNA (1491bp) protein (497aa)
thrC; Threonine synthase (EC:4.2.3.1)
Threonine synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TEV4_9FIRM
Threonine synthase {ECO:0000313|EMBL:CDC66396.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_038_000M1_scaffold_93_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5293..6003
DNA (711bp) protein (237aa)
Ser/Thr phosphatase family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SYZ7_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04828.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_93_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6076..7356
DNA (1281bp) protein (427aa)
tig; Trigger factor (EC:5.2.1.8)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000313|EMBL:CCO04829.1};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Trigger factor n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T9J8_9FIRM
L2_038_000M1_scaffold_93_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7420..8010
DNA (591bp) protein (197aa)
clpP; ATP-dependent Clp endopeptidase, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2G4_9FIRM
L2_038_000M1_scaffold_93_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8025..9287
DNA (1263bp) protein (421aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TEV8_9FIRM
clpX; ATP-dependent Clp protease ATP-binding subunit clpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_93_11
unknown

Not on your lists

comp(9676..9972)
DNA (297bp) protein (99aa)

This feature has no annotations

L2_038_000M1_scaffold_93_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10025..11287
DNA (1263bp) protein (421aa)
Recombination factor protein RarA n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZ02_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04833.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_93_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11490..12755
DNA (1266bp) protein (422aa)
glyA; Serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051, ECO:0000313|EMBL:CCO04834.1}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051, ECO:0000313|EMBL:CCO04834.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Serine hydroxymethyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T9K5_9FIRM
L2_038_000M1_scaffold_93_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12913..13848
DNA (936bp) protein (312aa)
metA; Homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Homoserine O-succinyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2G8_9FIRM
L2_038_000M1_scaffold_93_15
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13845..14525
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TEW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66406.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L2_038_000M1_scaffold_93_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14592..15491
DNA (900bp) protein (300aa)
fruK; fructose-1-phosphate kinase (EC:2.7.1.56)
Tagatose-6-phosphate kinase {ECO:0000256|PIRNR:PIRNR000535}; EC=2.7.1.144 {ECO:0000256|PIRNR:PIRNR000535};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Tagatose-6-phosphate kinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZ08_9FIRM
L2_038_000M1_scaffold_93_17
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15514..15615
DNA (102bp) protein (34aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T9L1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66409.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_038_000M1_scaffold_93_18
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15697..15963
DNA (267bp) protein (89aa)
ptsH3; Phosphocarrier protein HPr (EC:2.7.11.-)
Phosphocarrier protein HPr {ECO:0000313|EMBL:CCO04838.1}; EC=2.7.11.- {ECO:0000313|EMBL:CCO04838.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Phosphotransferase System HPr (HPr) Family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2H3_9FIRM
L2_038_000M1_scaffold_93_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16065..18002
DNA (1938bp) protein (646aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854, ECO:0000313|EMBL:CCO04839.1};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
fbp; Fructose-1,6-bisphosphatase III (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 3 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TEW7_9FIRM
L2_038_000M1_scaffold_93_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18026..18136
DNA (111bp) protein (37aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6G7_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04840.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_93_21
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18277..19197)
DNA (921bp) protein (307aa)
S1 RNA binding domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZ13_9FIRM
rpsA; ribosomal protein S1e
S1 RNA binding domain protein {ECO:0000313|EMBL:CDC66413.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_038_000M1_scaffold_93_22
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19598..20500
DNA (903bp) protein (301aa)
Fibronectin type III domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T9L6_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04842.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_93_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20621..21403
DNA (783bp) protein (261aa)
Transcriptional regulator AraC family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2H6_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDC66415.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Transcriptional regulator, AraC family
L2_038_000M1_scaffold_93_24
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21478..21759)
DNA (282bp) protein (94aa)
Alpha amylase catalytic region n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TEX2_9FIRM
Alpha amylase catalytic region {ECO:0000313|EMBL:CDC66416.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Glycoside Hydrolase Family 13 protein
L2_038_000M1_scaffold_93_25
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21795..23006)
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6H5_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04845.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_93_26
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23201..24307
DNA (1107bp) protein (369aa)
GDSL-like protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZ18_9FIRM
hypothetical protein
GDSL-like protein {ECO:0000313|EMBL:CDC66418.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_038_000M1_scaffold_93_27
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24406..24777
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T9M2_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04847.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_93_28
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25241..26536)
DNA (1296bp) protein (432aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
eno; phosphopyruvate hydratase (EC:4.2.1.11)
Enolase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2I0_9FIRM
L2_038_000M1_scaffold_93_29
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26949..27656)
DNA (708bp) protein (236aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
ispD1; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TEX7_9FIRM
L2_038_000M1_scaffold_93_30
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27728..28873)
DNA (1146bp) protein (382aa)
prs; ribose-phosphate diphosphokinase (EC:2.7.6.1)
Ribose-phosphate diphosphokinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6I0_9FIRM
Ribose-phosphate diphosphokinase {ECO:0000313|EMBL:CDC66422.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Displaying items 1-30 of 124 in total

View Taxonomy