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L2_038_000M1_scaffold_110

Search features with annotation key words

Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_038_000M1_scaffold_110_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(110..1363)
DNA (1254bp) protein (418aa)
Cell division septal protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGW8_BIFBI
FtsQ Cell division protein {ECO:0000313|EMBL:KFI42630.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
ftsQ; cell division septal protein
L2_038_000M1_scaffold_110_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1363..2952)
DNA (1590bp) protein (530aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HVH2_BIFBI
L2_038_000M1_scaffold_110_3
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3023..4192)
DNA (1170bp) protein (390aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=2 Tax=Bifidobacterium RepID=E3EMW8_BIFBS
murG; UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
L2_038_000M1_scaffold_110_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4318..5577)
DNA (1260bp) protein (420aa)
Cell division protein FtsW n=5 Tax=Bifidobacterium RepID=E3EMW7_BIFBS
fstW; putative cell cycle protein
FtsW-like protein {ECO:0000313|EMBL:KFI42627.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_038_000M1_scaffold_110_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5642..7072)
DNA (1431bp) protein (477aa)
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=4 Tax=Bifidobacterium bifidum RepID=I3WGW4_BIFBI
L2_038_000M1_scaffold_110_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7183..8289)
DNA (1107bp) protein (369aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=2 Tax=Bifidobacterium bifidum RepID=I3WGW3_BIFBI
L2_038_000M1_scaffold_110_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8307..9866)
DNA (1560bp) protein (520aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HVG5_BIFBI
murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
L2_038_000M1_scaffold_110_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9863..10891)
DNA (1029bp) protein (343aa)
UDP-N-acetylmuramyl tripeptide synthase n=8 Tax=Bifidobacterium bifidum RepID=I3WGW1_BIFBI
UDP-N-acetylmuramyl tripeptide synthase
Uncharacterized protein {ECO:0000313|EMBL:KFI42623.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_038_000M1_scaffold_110_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10954..12768)
DNA (1815bp) protein (605aa)
Peptidoglycan synthetase FtsI, penicillin-binding protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EMW2_BIFBS
Peptidoglycan synthetase FtsI, penicillin-binding protein {ECO:0000313|EMBL:ADO52779.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
fts1; peptidoglycan synthetase FtsI, penicillin-binding protein
L2_038_000M1_scaffold_110_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12765..13235)
DNA (471bp) protein (157aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WGV9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52778.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_038_000M1_scaffold_110_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13235..14347)
DNA (1113bp) protein (371aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EMW0_BIFBS
mraW; S-adenosyl-methyltransferase MraW
L2_038_000M1_scaffold_110_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14347..14853)
DNA (507bp) protein (169aa)
Protein MraZ n=7 Tax=Bifidobacterium RepID=E3EMV9_BIFBS
mraW; cell division protein
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_038_000M1_scaffold_110_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15071..17350
DNA (2280bp) protein (760aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V8H5_BIFBI
ATP-dependent DNA helicase
L2_038_000M1_scaffold_110_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17361..18560
DNA (1200bp) protein (400aa)
Putative phosphoglycerate dehydrogenase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V8H4_BIFBI
Putative phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EFR49916.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
serA; D-3-phosphoglycerate dehydrogenase
L2_038_000M1_scaffold_110_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18788..19123)
DNA (336bp) protein (112aa)
Transcriptional repressor NrdR n=3 Tax=Bifidobacterium bifidum RepID=E3EMV6_BIFBS
nrdR; transcriptional regulator
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_038_000M1_scaffold_110_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19401..19898)
DNA (498bp) protein (166aa)
LytE protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGV3_BIFBI
lytE; lytE protein
LytE protein {ECO:0000313|EMBL:AFL04116.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_038_000M1_scaffold_110_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20048..20749
DNA (702bp) protein (234aa)
lexA; DNA-binding transcriptional repressor (EC:3.4.21.88)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
LexA repressor n=4 Tax=Bifidobacterium RepID=E3EMV4_BIFBS
L2_038_000M1_scaffold_110_18
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20884..21822)
DNA (939bp) protein (313aa)
Cation diffusion facilitator family transporter n=5 Tax=Bifidobacterium RepID=E3EMV3_BIFBS
czcD; cation efflux system protein
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:CDB22925.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_038_000M1_scaffold_110_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22192..23154)
DNA (963bp) protein (321aa)
L-lactate dehydrogenase (EC:1.1.1.27)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L-lactate dehydrogenase n=5 Tax=Bifidobacterium RepID=E3EMV2_BIFBS
L2_038_000M1_scaffold_110_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23346..24911)
DNA (1566bp) protein (522aa)
GTPase HflX n=5 Tax=Bifidobacterium bifidum RepID=E3EMV1_BIFBS
GTP-binding protein
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_038_000M1_scaffold_110_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25122..25688)
DNA (567bp) protein (189aa)
Restriction endonuclease n=3 Tax=Bifidobacterium RepID=I3WGU8_BIFBI
restriction endonuclease
Uncharacterized protein {ECO:0000313|EMBL:CDB22928.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_038_000M1_scaffold_110_22
unknown

Not on your lists

25740..25829
DNA (90bp) protein (30aa)

This feature has no annotations

L2_038_000M1_scaffold_110_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25793..26053)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I583_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE49909.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
restriction endonuclease
L2_038_000M1_scaffold_110_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26286..26939
DNA (654bp) protein (218aa)
16S RNA methylase (EC:2.1.1.171)
16S RNA methylase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0L3_BIFBP
Methyltransferase small domain protein {ECO:0000313|EMBL:ERI84033.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97733.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_038_000M1_scaffold_110_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26944..31032
DNA (4089bp) protein (1363aa)
ATP-dependent helicase HrpA with DUF3418 domain n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EMU8_BIFBS
ATP-dependent helicase HrpA with DUF3418 domain {ECO:0000313|EMBL:ADO52765.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
hrpA; ATP-dependent helicase HrpA
L2_038_000M1_scaffold_110_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31113..32159
DNA (1047bp) protein (349aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=U2DW27_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI84031.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_038_000M1_scaffold_110_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32122..32493)
DNA (372bp) protein (124aa)
Major facilitator superfamily MFS 1 n=2 Tax=Bifidobacterium bifidum RepID=K2LCR0_BIFBI
Membrane spanning protein {ECO:0000313|EMBL:KFI42606.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L2_038_000M1_scaffold_110_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32685..34082
DNA (1398bp) protein (466aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4V8G2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49904.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
telomeric repeat-binding factor 2 domain
L2_038_000M1_scaffold_110_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34208..35545)
DNA (1338bp) protein (446aa)
glnA; glutamine synthetase, type I (EC:6.3.1.2)
Glutamine synthetase, type I {ECO:0000313|EMBL:AFL04106.1}; EC=6.3.1.2 {ECO:0000313|EMBL:AFL04106.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Glutamine synthetase type I, catalytic domain protein n=8 Tax=Bifidobacterium RepID=E3EMU4_BIFBS
L2_038_000M1_scaffold_110_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35652..37097
DNA (1446bp) protein (482aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DQY6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42603.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
Displaying items 1-30 of 100 in total

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