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L2_038_000M1_scaffold_243

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_038_000M1_scaffold_243_1
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

89..1453
DNA (1365bp) protein (455aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQU7_BIFBS
hypothetical protein
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:CDB22265.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_038_000M1_scaffold_243_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1529..3700)
DNA (2172bp) protein (724aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
glgX; glycogen operon protein GlgX (EC:3.2.1.68)
Glycogen operon protein glgX n=4 Tax=Bifidobacterium RepID=E3EQU6_BIFBS
L2_038_000M1_scaffold_243_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3733..4464)
DNA (732bp) protein (244aa)
phosphohydrolase (EC:3.6.1.13)
Phosphohydrolase (MutT/nudix family protein) n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P171_BIFBP
Putative nudix hydrolase {ECO:0000313|EMBL:AFL04341.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_038_000M1_scaffold_243_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4518..5435)
DNA (918bp) protein (306aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Putative GTP cyclohydrolase 1 type 2 n=2 Tax=Bifidobacterium bifidum RepID=E4V942_BIFBI
hypothetical protein
L2_038_000M1_scaffold_243_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5477..8308)
DNA (2832bp) protein (944aa)
polA; DNA polymerase I (EC:2.7.7.7)
DNA polymerase I {ECO:0000313|EMBL:AFL04339.1}; EC=2.7.7.7 {ECO:0000313|EMBL:AFL04339.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
DNA polymerase I n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHH6_BIFBI
L2_038_000M1_scaffold_243_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8305..9081)
DNA (777bp) protein (259aa)
Transcriptional regulator n=8 Tax=Bifidobacterium RepID=E3EQU2_BIFBS
amiR; putative two-component system responseregulator
Transcriptional regulator {ECO:0000313|EMBL:ADO52984.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_038_000M1_scaffold_243_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9489..10088
DNA (600bp) protein (200aa)
aspA; ADP-ribose pyrophosphatase (EC:3.6.1.13)
AspA ADP-ribose pyrophosphatase n=5 Tax=Bifidobacterium RepID=E4P167_BIFBP
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EKF16358.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_038_000M1_scaffold_243_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10297..11739)
DNA (1443bp) protein (481aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Pyruvate kinase n=7 Tax=Bifidobacterium RepID=E3EQU0_BIFBS
pyk; Pyruvate kinase
L2_038_000M1_scaffold_243_9
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11881..12882)
DNA (1002bp) protein (334aa)
TerC Tellurium resistance protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P165_BIFBP
terC; tellurium resistance protein
TerC Tellurium resistance protein {ECO:0000313|EMBL:CDB22257.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_038_000M1_scaffold_243_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12918..15029)
DNA (2112bp) protein (704aa)
UvrABC system protein B n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M5L2_BIFBI
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
uvrB; excinuclease ABC subunit B
L2_038_000M1_scaffold_243_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15208..15816)
DNA (609bp) protein (203aa)
coaE; dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Dephospho-CoA kinase n=4 Tax=Bifidobacterium RepID=E4P163_BIFBP
L2_038_000M1_scaffold_243_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(16140..17612)
DNA (1473bp) protein (491aa)
rpsA; 30S ribosomal protein S1 (EC:1.17.1.2)
30S ribosomal protein S1 n=3 Tax=Bifidobacterium bifidum RepID=E4P162_BIFBP
30S ribosomal protein S1 {ECO:0000313|EMBL:AFL04332.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_038_000M1_scaffold_243_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17760..18635)
DNA (876bp) protein (292aa)
folD; 5, 10-methylene-tetrahydrofolatedehydrogenase/Methenyl tetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Bifunctional protein FolD n=5 Tax=Bifidobacterium bifidum RepID=I3WHG8_BIFBI
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_038_000M1_scaffold_243_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18698..19792
DNA (1095bp) protein (365aa)
Zinc-binding lipo protein n=2 Tax=Bifidobacterium bifidum RepID=I3WHG7_BIFBI
adcA; zinc-binding lipo protein
Zinc-binding lipo protein {ECO:0000313|EMBL:EKF16351.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_038_000M1_scaffold_243_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19960..20850
DNA (891bp) protein (297aa)
Zinc/manganese transport system, ATP-binding protein n=3 Tax=Bifidobacterium RepID=E3EQT3_BIFBS
zinc/manganese ABC transporter ATP-binding protein
ABC transporter ATP-binding component {ECO:0000313|EMBL:BAQ97943.1}; ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI84402.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_038_000M1_scaffold_243_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20847..21683
DNA (837bp) protein (279aa)
Zinc/manganese transport system, permease protein n=8 Tax=Bifidobacterium RepID=E3EQT2_BIFBS
zinc/manganese ABC transporter permease
ABC 3 transport family protein {ECO:0000313|EMBL:EFR50121.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_038_000M1_scaffold_243_17
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21777..22265)
DNA (489bp) protein (163aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphatesynthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6H7S9_9BIFI
L2_038_000M1_scaffold_243_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22272..22868)
DNA (597bp) protein (199aa)
Transcriptional regulator, CarD family n=8 Tax=Bifidobacterium RepID=E3EQT0_BIFBS
CarD family transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:EKE49923.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_038_000M1_scaffold_243_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22996..25251
DNA (2256bp) protein (752aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
glgB; 1,4-alpha-glucan branching protein (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB n=6 Tax=Bifidobacterium RepID=E4P155_BIFBP
L2_038_000M1_scaffold_243_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25265..25984
DNA (720bp) protein (240aa)
Two-component response regulator n=8 Tax=Bifidobacterium RepID=E3EQS8_BIFBS
mtrA; DNA-binding response regulator
DNA-binding response regulator MtrA {ECO:0000313|EMBL:EFR50117.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_038_000M1_scaffold_243_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25984..27090
DNA (1107bp) protein (369aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Sensory transduction protein kinase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQS7_BIFBS
Sensory transduction protein kinase
L2_038_000M1_scaffold_243_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27159..27554
DNA (396bp) protein (132aa)
UmuD protein n=2 Tax=Bifidobacterium bifidum RepID=K2HTS3_BIFBI
peptidase S24-like domain
Uncharacterized protein {ECO:0000313|EMBL:ADO52968.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_038_000M1_scaffold_243_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27664..28380)
DNA (717bp) protein (239aa)
Amidophosphoribosyl transferase-like protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHF8_BIFBI
amidophosphoribosyl transferase-like protein
Amidophosphoribosyl transferase-like protein {ECO:0000313|EMBL:AFL04321.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_038_000M1_scaffold_243_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28384..29211)
DNA (828bp) protein (276aa)
Phosphomannomutase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I5A3_BIFBI
Phosphomannomutase {ECO:0000313|EMBL:EKE49929.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
pmmC; phosphomannomutase
L2_038_000M1_scaffold_243_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29344..29718
DNA (375bp) protein (125aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=I3WHF6_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42794.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_038_000M1_scaffold_243_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29791..31302)
DNA (1512bp) protein (504aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H7F8_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE49931.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L2_038_000M1_scaffold_243_27
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31299..34448)
DNA (3150bp) protein (1050aa)
Regulatory protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6H7U1_9BIFI
Regulatory protein {ECO:0000313|EMBL:CDB22322.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
regulatory protein
L2_038_000M1_scaffold_243_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34482..34838)
DNA (357bp) protein (119aa)
Transcriptional regulator WhiB n=9 Tax=Bifidobacterium RepID=E3EQS0_BIFBS
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
transcription factor WhiB
L2_038_000M1_scaffold_243_29
unknown

Not on your lists

comp(34853..35017)
DNA (165bp) protein (55aa)

This feature has no annotations

L2_038_000M1_scaffold_243_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35063..36538
DNA (1476bp) protein (492aa)
Membrane-bound protein n=3 Tax=Bifidobacterium bifidum RepID=I3WHF2_BIFBI
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:KFI42790.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Displaying items 1-30 of 62 in total

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