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L2_038_000M1_scaffold_262

Search features with annotation key words

Displaying items 1-30 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_038_000M1_scaffold_262_1
unknown

Not on your lists

3..191
DNA (189bp) protein (63aa)

This feature has no annotations

L2_038_000M1_scaffold_262_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(148..642)
DNA (495bp) protein (165aa)
Thioesterase superfamily protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIK4_9FIRM
Thioesterase superfamily protein {ECO:0000313|EMBL:CCZ78088.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
thioesterase superfamily protein
L2_038_000M1_scaffold_262_3
Eubacterium eligens CAG:72, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(635..877)
DNA (243bp) protein (81aa)
Prevent-host-death family protein n=1 Tax=Eubacterium eligens CAG:72 RepID=R5ZP76_9FIRM
Prevent-host-death family protein {ECO:0000313|EMBL:CDA38289.1}; TaxID=1263077 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium eligens CAG:72.;"
prevent-host-death family protein
L2_038_000M1_scaffold_262_4
unknown

Not on your lists

comp(938..1132)
DNA (195bp) protein (65aa)

This feature has no annotations

L2_038_000M1_scaffold_262_5
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1415..1633)
DNA (219bp) protein (73aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZA20_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75461.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L2_038_000M1_scaffold_262_6
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1648..2490)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NBA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF09851.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
hypothetical protein
L2_038_000M1_scaffold_262_7
Dehalobacter sp. CF, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2630..2902)
DNA (273bp) protein (91aa)
Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal n=1 Tax=Dehalobacter sp. CF RepID=K4KYA5_9FIRM
Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal
Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal {ECO:0000313|EMBL:AFV04057.1}; TaxID=1131462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Dehalobacter.;" source="Dehalobacter sp. CF.;"
L2_038_000M1_scaffold_262_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2966..4000)
DNA (1035bp) protein (345aa)
Uncharacterized conserved protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3L6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEU99572.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L2_038_000M1_scaffold_262_9
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4045..4377)
DNA (333bp) protein (111aa)
Type III restriction-modification system methylation subunit (EC:2.1.1.72)
Site-specific DNA-methyltransferase (Adenine-specific) n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NCN5_9FIRM
Site-specific DNA-methyltransferase (Adenine-specific) {ECO:0000313|EMBL:CDF09853.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
L2_038_000M1_scaffold_262_10
[Bacteroides] pectinophilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4632..4739)
DNA (108bp) protein (36aa)
Putative uncharacterized protein n=1 Tax=[Bacteroides] pectinophilus ATCC 43243 RepID=B7ARB5_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEC58237.1}; TaxID=483218 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="[Bacteroides] pectinophilus ATCC 43243.;"
L2_038_000M1_scaffold_262_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5148..6224)
DNA (1077bp) protein (359aa)
Peptide chain release factor 1 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJC6_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
peptide chain release factor 1
L2_038_000M1_scaffold_262_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6228..7079)
DNA (852bp) protein (284aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Release factor glutamine methyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQT6_9FIRM
protein-(glutamine-N5) methyltransferase, release factor-specific
L2_038_000M1_scaffold_262_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7076..8053)
DNA (978bp) protein (326aa)
Predicted metal-dependent enzyme n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIM3_9FIRM
Predicted metal-dependent enzyme {ECO:0000313|EMBL:CCZ78118.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted metal-dependent enzyme
L2_038_000M1_scaffold_262_14
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(8090..8290)
DNA (201bp) protein (67aa)
50S ribosomal protein L31 n=6 Tax=Clostridiales RepID=C4Z908_EUBR3
ribosomal protein L31
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L2_038_000M1_scaffold_262_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8486..9988)
DNA (1503bp) protein (501aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Transcription termination factor Rho n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3X3_9FIRM
transcription termination factor Rho
L2_038_000M1_scaffold_262_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10159..11364
DNA (1206bp) protein (402aa)
Malate dehydrogenase (Oxaloacetate-decarboxylating) n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJC2_9FIRM
Malate dehydrogenase (Oxaloacetate-decarboxylating) {ECO:0000313|EMBL:CCZ78115.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
malate dehydrogenase (oxaloacetate-decarboxylating)
L2_038_000M1_scaffold_262_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11354..12271
DNA (918bp) protein (306aa)
Putative radical SAM protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQT3_9FIRM
Putative radical SAM protein {ECO:0000313|EMBL:CCZ78114.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative radical SAM protein
L2_038_000M1_scaffold_262_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12264..12779
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIL9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78113.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_038_000M1_scaffold_262_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12788..13357)
DNA (570bp) protein (190aa)
Nitrilotriacetate monooxygenase component B n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBK8_9FIRM
Nitrilotriacetate monooxygenase component B {ECO:0000313|EMBL:CCZ78112.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
nitrilotriacetate monooxygenase component B
L2_038_000M1_scaffold_262_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13399..14871)
DNA (1473bp) protein (491aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3X0_9FIRM
L2_038_000M1_scaffold_262_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14872..15708)
DNA (837bp) protein (279aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJB9_9FIRM
L2_038_000M1_scaffold_262_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15874..16716
DNA (843bp) protein (281aa)
Positive regulator for rhaBAD operon n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQT0_9FIRM
Positive regulator for rhaBAD operon {ECO:0000313|EMBL:CCZ78109.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
positive regulator for rhaBAD operon
L2_038_000M1_scaffold_262_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16729..18402)
DNA (1674bp) protein (558aa)
Inorganic pyrophosphatase/exopolyphosphatase (EC:3.6.1.1)
Inorganic pyrophosphatase/exopolyphosphatase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIL7_9FIRM
Inorganic pyrophosphatase/exopolyphosphatase {ECO:0000313|EMBL:CCZ78108.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L2_038_000M1_scaffold_262_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18504..19274)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78107.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_038_000M1_scaffold_262_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19395..19658)
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3W7_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
rpsT; 30S ribosomal protein S20
L2_038_000M1_scaffold_262_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19822..20805
DNA (984bp) protein (328aa)
DNA polymerase III, delta subunit (EC:2.7.7.7)
DNA polymerase III delta subunit n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJB5_9FIRM
DNA polymerase III delta subunit {ECO:0000313|EMBL:CCZ78105.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L2_038_000M1_scaffold_262_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20812..23214)
DNA (2403bp) protein (801aa)
Putative integral membrane protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQS6_9FIRM
Putative integral membrane protein {ECO:0000313|EMBL:CCZ78104.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA internalization-related competence protein ComEC/Rec2
L2_038_000M1_scaffold_262_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23226..24167)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78103.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_038_000M1_scaffold_262_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24178..25629)
DNA (1452bp) protein (484aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Signal transduction histidine kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBK2_9FIRM
signal transduction histidine kinase
L2_038_000M1_scaffold_262_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25654..26346)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3W4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78101.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Displaying items 1-30 of 105 in total

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