ggKbase home page

L2_038_000M1_scaffold_357

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_038_000M1_scaffold_357_1
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(462..3917)
DNA (3456bp) protein (1152aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
mfd; Transcription-repair coupling factor (superfamily II helicase) (EC:3.6.1.-)
Transcription-repair-coupling factor n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG39_9FIRM
L2_038_000M1_scaffold_357_2
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3943..4566)
DNA (624bp) protein (208aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
pth; Peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7P9_9FIRM
L2_038_000M1_scaffold_357_3
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4747..5220)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T054_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66838.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L2_038_000M1_scaffold_357_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5364..5579
DNA (216bp) protein (72aa)
Helix-turn-helix n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAW2_9FIRM
Putative HTH-type transcriptional regulator
Putative HTH-type transcriptional regulator {ECO:0000313|EMBL:CCO03872.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_357_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5627..7054)
DNA (1428bp) protein (476aa)
glmU; Bifunctional protein GlmU (EC:2.7.7.23)
Bifunctional protein GlmU n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3R0_9FIRM
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_357_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7280..8098
DNA (819bp) protein (273aa)
Transcriptional regulator AraC family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG45_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDC66841.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
transcriptional regulator, AraC family
L2_038_000M1_scaffold_357_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8112..8606
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7Q6_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03869.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_357_8
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8786..9784)
DNA (999bp) protein (333aa)
Glycosidase related protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T059_9FIRM
Glycoside Hydrolase Family 130 protein
Glycosidase related protein {ECO:0000313|EMBL:CDC66843.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_038_000M1_scaffold_357_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10390..11667
DNA (1278bp) protein (426aa)
Putative transcriptional regulator GntR family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAW6_9FIRM
HTH-type transcriptional regulator
HTH-type transcriptional regulator {ECO:0000313|EMBL:CCO03867.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_357_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11827..12690)
DNA (864bp) protein (288aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3R4_9FIRM
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDC66845.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Binding-protein-dependent transport system membrane component
L2_038_000M1_scaffold_357_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12690..13658)
DNA (969bp) protein (323aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG51_9FIRM
Binding-protein-dependent transport system membrane component
Binding-protein-dependent transport system membrane component {ECO:0000313|EMBL:CCO03865.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_357_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13732..15099)
DNA (1368bp) protein (456aa)
Extracellular solute-binding protein family 1 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7R3_9FIRM
ABC transporter extracellular-binding protein
ABC transporter extracellular-binding protein {ECO:0000313|EMBL:CCO03864.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_357_13
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15500..16504)
DNA (1005bp) protein (335aa)
Sugar-binding domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T065_9FIRM
Sugar-binding domain protein {ECO:0000313|EMBL:CDC66848.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
transcriptional regulator, LacI family
L2_038_000M1_scaffold_357_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16634..17272)
DNA (639bp) protein (213aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAX1_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03862.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_357_15
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17523..18749
DNA (1227bp) protein (409aa)
SpoIVB peptidase (EC:3.4.21.116)
SpoIVB peptidase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3R8_9FIRM
SpoIVB peptidase {ECO:0000313|EMBL:CDC66850.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_038_000M1_scaffold_357_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19020..19802
DNA (783bp) protein (261aa)
Putative sporulation transcription factor Spo0A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG56_9FIRM
spo0A; Stage 0 sporulation protein A homolog
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937, ECO:0000313|EMBL:CCO03860.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_357_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20052..21548)
DNA (1497bp) protein (499aa)
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7S0_9FIRM
Sugar transferase
Sugar transferase {ECO:0000313|EMBL:CCO03859.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_357_18
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21749..22603
DNA (855bp) protein (285aa)
metF; 5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862, ECO:0000313|EMBL:CCO03858.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Methylenetetrahydrofolate reductase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T074_9FIRM
L2_038_000M1_scaffold_357_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22875..24149)
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3S3_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO03857.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_357_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24165..26015)
DNA (1851bp) protein (617aa)
Secretion protein HlyD family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG62_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO03856.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_357_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26012..26698)
DNA (687bp) protein (229aa)
ABC transporter ATPase component (EC:3.6.3.-)
ABC transporter ATPase component {ECO:0000313|EMBL:CCO03855.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCO03855.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ABC transporter related protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7S7_9FIRM
L2_038_000M1_scaffold_357_22
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26711..28252)
DNA (1542bp) protein (514aa)
Efflux transporter RND family MFP subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T079_9FIRM
Efflux transporter RND family MFP subunit {ECO:0000313|EMBL:CDC66858.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L2_038_000M1_scaffold_357_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28564..28839)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66859.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L2_038_000M1_scaffold_357_24
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29176..29805
DNA (630bp) protein (210aa)
Putative orotate phosphoribosyltransferase (EC:2.4.2.10)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3S8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66860.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_038_000M1_scaffold_357_25
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30051..30602)
DNA (552bp) protein (184aa)
TIGR04002 family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG67_9FIRM
Putative membrane protein
TIGR04002 family protein {ECO:0000313|EMBL:CDC66861.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_038_000M1_scaffold_357_26
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30998..31432)
DNA (435bp) protein (145aa)
Transcriptional regulator BadM/Rrf2 family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7T3_9FIRM
Transcriptional regulator BadM/Rrf2 family {ECO:0000313|EMBL:CDC66862.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Putative transcriptional regulator (rrf2 family)
L2_038_000M1_scaffold_357_27
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31636..32142
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T086_9FIRM
conserved hypothetical protein
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_038_000M1_scaffold_357_28
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32142..34214
DNA (2073bp) protein (691aa)
Putative protease (EC:3.4.-.-)
Peptidase U32 family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAY4_9FIRM
Peptidase U32 family {ECO:0000313|EMBL:CDC66864.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_038_000M1_scaffold_357_29
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34216..34656
DNA (441bp) protein (147aa)
dut; dUTP pyrophosphatase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|SAAS:SAAS00071038}; EC=3.6.1.23 {ECO:0000256|SAAS:SAAS00071036, ECO:0000313|EMBL:CCO03847.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
DUTP diphosphatase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3T2_9FIRM
L2_038_000M1_scaffold_357_30
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34675..35823
DNA (1149bp) protein (383aa)
Putative amidohydrolase (EC:3.5.2.-)
Amidohydrolase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG72_9FIRM
Amidohydrolase {ECO:0000313|EMBL:CDC66866.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Displaying items 1-30 of 57 in total

View Taxonomy