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L2_038_000M1_scaffold_407

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_038_000M1_scaffold_407_1
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..1023
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MIS4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS70984.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
hypothetical protein
L2_038_000M1_scaffold_407_2
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1044..1358
DNA (315bp) protein (105aa)
Type I restriction-modification system methyltransferase subunit (EC:2.1.1.72)
N-6 DNA Methylase n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LMF5_9FIRM
N-6 DNA Methylase {ECO:0000313|EMBL:EET58181.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
L2_038_000M1_scaffold_407_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1340..1669
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C3S6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22028.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Type I restriction-modification system methyltransferase subunit
L2_038_000M1_scaffold_407_4
Treponema azotonutricium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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1654..1875
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9) RepID=F5YFT8_TREAZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEF83169.1}; TaxID=545695 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9).;"
L2_038_000M1_scaffold_407_5
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2185..2922
DNA (738bp) protein (246aa)
Type I site-specific restriction-modification system, R (restriction) subunit and related helicases (EC:3.1.21.3)
Helicase C-terminal domain protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LMG2_9FIRM
Helicase C-terminal domain protein {ECO:0000313|EMBL:EET58188.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
L2_038_000M1_scaffold_407_6
unknown

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2953..3057
DNA (105bp) protein (35aa)

This feature has no annotations

L2_038_000M1_scaffold_407_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3858..4613)
DNA (756bp) protein (252aa)
exodeoxyribonuclease III (EC:3.1.11.2)
Exodeoxyribonuclease n=1 Tax=Roseburia sp. CAG:18 RepID=R5VC38_9FIRM
Exodeoxyribonuclease {ECO:0000313|EMBL:CCZ78337.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L2_038_000M1_scaffold_407_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5039..5506
DNA (468bp) protein (156aa)
Ribosome maturation factor RimP n=1 Tax=Roseburia sp. CAG:18 RepID=R5V4F5_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ribosome maturation protein RimP
L2_038_000M1_scaffold_407_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5553..6776
DNA (1224bp) protein (408aa)
Transcription elongation factor NusA n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJV8_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
transcription termination factor NusA
L2_038_000M1_scaffold_407_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6779..7048
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5URF7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78334.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_038_000M1_scaffold_407_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7041..7352
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJ89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78333.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
50S ribosomal protein L7Ae/L30e/S12e/Gadd45
L2_038_000M1_scaffold_407_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7388..10078
DNA (2691bp) protein (897aa)
Translation initiation factor IF-2 n=1 Tax=Roseburia sp. CAG:18 RepID=R5VC33_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
translation initiation factor IF-2
L2_038_000M1_scaffold_407_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10087..10467
DNA (381bp) protein (127aa)
Ribosome-binding factor A n=1 Tax=Roseburia sp. CAG:18 RepID=R5V4F2_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ribosome-binding factor A
L2_038_000M1_scaffold_407_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10454..11401
DNA (948bp) protein (316aa)
Exopolyphosphatase-related proteins n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJV3_9FIRM
Exopolyphosphatase-related proteins {ECO:0000313|EMBL:CCZ78330.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Exopolyphosphatase-related proteins
L2_038_000M1_scaffold_407_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11403..12314
DNA (912bp) protein (304aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
tRNA pseudouridine synthase B n=1 Tax=Roseburia sp. CAG:18 RepID=R5URF0_9FIRM
tRNA pseudouridine synthase B
L2_038_000M1_scaffold_407_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12317..13249
DNA (933bp) protein (311aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
riboflavin kinase/FMN adenylyltransferase (EC:2.7.7.2 2.7.1.26)
Riboflavin biosynthesis protein RibF n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJ83_9FIRM
L2_038_000M1_scaffold_407_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13354..14508
DNA (1155bp) protein (385aa)
Cell wall-associated hydrolases (Invasion-associated proteins) n=1 Tax=Roseburia sp. CAG:18 RepID=R5VC28_9FIRM
Cell wall-associated hydrolases (Invasion-associated proteins) {ECO:0000313|EMBL:CCZ78327.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Cell wall-associated hydrolases (invasion-associated proteins)
L2_038_000M1_scaffold_407_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14637..14903
DNA (267bp) protein (89aa)
30S ribosomal protein S15 n=1 Tax=Roseburia sp. CAG:18 RepID=R5V4E6_9FIRM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
SSU ribosomal protein S15P
L2_038_000M1_scaffold_407_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15060..17156
DNA (2097bp) protein (699aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Polyribonucleotide nucleotidyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJU9_9FIRM
polynucleotide phosphorylase/polyadenylase
L2_038_000M1_scaffold_407_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17272..18138
DNA (867bp) protein (289aa)
Intracellular alkaline serine proteinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5URE6_9FIRM
Intracellular alkaline serine proteinase {ECO:0000313|EMBL:CCZ78324.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
peptidase S8 and S53 subtilisin kexin sedolisin
L2_038_000M1_scaffold_407_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18194..19747
DNA (1554bp) protein (518aa)
Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes (EC:2.7.8.-)
Cardiolipin synthetase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJ76_9FIRM
Cardiolipin synthetase {ECO:0000313|EMBL:CCZ78323.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L2_038_000M1_scaffold_407_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19829..20578
DNA (750bp) protein (250aa)
Segregation and condensation protein A n=1 Tax=Roseburia sp. CAG:18 RepID=R5VC22_9FIRM
Segregation and condensation protein A {ECO:0000256|HAMAP-Rule:MF_01805, ECO:0000256|SAAS:SAAS00093938}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
segregation and condensation protein A
L2_038_000M1_scaffold_407_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20544..21179
DNA (636bp) protein (212aa)
Segregation and condensation protein B n=1 Tax=Roseburia sp. CAG:18 RepID=R5V4E1_9FIRM
Segregation and condensation protein B {ECO:0000256|HAMAP-Rule:MF_01804, ECO:0000256|SAAS:SAAS00086417}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
segregation and condensation protein B
L2_038_000M1_scaffold_407_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21234..22460
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78320.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
L2_038_000M1_scaffold_407_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22578..24014
DNA (1437bp) protein (479aa)
Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) (EC:6.4.1.3)
Acetyl-CoA carboxylase carboxyltransferase component (Subunits alpha and beta) n=1 Tax=Roseburia sp. CAG:18 RepID=R5URE1_9FIRM
Acetyl-CoA carboxylase carboxyltransferase component (Subunits alpha and beta) {ECO:0000313|EMBL:CCZ78319.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L2_038_000M1_scaffold_407_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24029..24802
DNA (774bp) protein (258aa)
Oxaloacetate decarboxylase gamma chain n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJ71_9FIRM
Oxaloacetate decarboxylase gamma chain {ECO:0000313|EMBL:CCZ78318.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L2_038_000M1_scaffold_407_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24834..25205
DNA (372bp) protein (124aa)
Biotin carboxyl carrier protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VC16_9FIRM
Biotin carboxyl carrier protein {ECO:0000313|EMBL:CCZ78317.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
pyruvate carboxylase subunit B
L2_038_000M1_scaffold_407_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25224..26372
DNA (1149bp) protein (383aa)
sodium ion-translocating decarboxylase, beta subunit (EC:4.1.1.3 4.1.1.70)
Sodium ion-translocating decarboxylase beta subunit n=1 Tax=Roseburia sp. CAG:18 RepID=R5V4D7_9FIRM
Sodium ion-translocating decarboxylase beta subunit {ECO:0000313|EMBL:CCZ78316.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L2_038_000M1_scaffold_407_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26388..27806
DNA (1419bp) protein (473aa)
Oxaloacetate decarboxylase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJT7_9FIRM
Oxaloacetate decarboxylase {ECO:0000313|EMBL:CCZ78315.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
oxaloacetate decarboxylase
L2_038_000M1_scaffold_407_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27876..28895
DNA (1020bp) protein (340aa)
Transcriptional regulators n=1 Tax=Roseburia sp. CAG:18 RepID=R5URD5_9FIRM
Transcriptional regulators {ECO:0000313|EMBL:CCZ78314.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
N-acetylmannosamine kinase
Displaying items 1-30 of 61 in total

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