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L2_038_000M1_scaffold_520

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Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_038_000M1_scaffold_520_1
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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450..1739
DNA (1290bp) protein (430aa)
Uncharacterized conserved protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L590_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL14785.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_520_2
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1739..2203
DNA (465bp) protein (155aa)
Predicted flavin-nucleotide-binding protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L589_9FIRM
Predicted flavin-nucleotide-binding protein
Predicted flavin-nucleotide-binding protein {ECO:0000313|EMBL:CBL14784.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_520_3
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2248..3228
DNA (981bp) protein (327aa)
L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D (EC:3.5.1.1)
L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DWP7_9FIRM
L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D {ECO:0000313|EMBL:CCX81042.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_038_000M1_scaffold_520_4
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3302..4603)
DNA (1302bp) protein (434aa)
Sodium/proton-potassium antiporter GerN, CPA2 family (TC 2.A.37.2.2) n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L585_9FIRM
sodium/proton-potassium antiporter GerN, CPA2 family (TC 2.A.37.2.2)
Sodium/proton-potassium antiporter GerN, CPA2 family (TC 2.A.37.2.2) {ECO:0000313|EMBL:CBL14780.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_520_5
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4797..5357)
DNA (561bp) protein (187aa)
Transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DWQ2_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CCX81047.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_038_000M1_scaffold_520_6
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5684..7984
DNA (2301bp) protein (767aa)
alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685, ECO:0000313|EMBL:CBL14779.1};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L584_9FIRM
L2_038_000M1_scaffold_520_7
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8117..9916
DNA (1800bp) protein (600aa)
Putative uncharacterized protein n=2 Tax=root RepID=D4L583_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14778.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_520_8
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9931..10839
DNA (909bp) protein (303aa)
Predicted esterase of the alpha-beta hydrolase superfamily n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L582_9FIRM
Predicted esterase of the alpha-beta hydrolase superfamily
Predicted esterase of the alpha-beta hydrolase superfamily {ECO:0000313|EMBL:CBL14777.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_520_9
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10902..11549
DNA (648bp) protein (216aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L581_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14776.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_520_10
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11671..11850
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DWQ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81057.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_038_000M1_scaffold_520_11
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11858..12931
DNA (1074bp) protein (358aa)
Peptide chain release factor 1 n=2 Tax=Ruminococcus RepID=D4L580_9FIRM
bacterial peptide chain release factor 1 (bRF-1)
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_520_12
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12936..13979
DNA (1044bp) protein (348aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DLC8_9FIRM
ywlC; putative tRNA threonylcarbamoyladenosine biosynthesis protein YwlC
L2_038_000M1_scaffold_520_13
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13966..14577
DNA (612bp) protein (204aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYM0_9FIRM
L2_038_000M1_scaffold_520_14
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14582..15202
DNA (621bp) protein (207aa)
Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) (EC:3.2.1.-)
Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains) {ECO:0000313|EMBL:CBL14774.1}; EC=3.2.1.- {ECO:0000313|EMBL:CBL14774.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains) n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L579_9FIRM
L2_038_000M1_scaffold_520_15
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15289..16701
DNA (1413bp) protein (471aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
M18 family aminopeptidase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DLJ2_9FIRM
Aspartyl aminopeptidase
L2_038_000M1_scaffold_520_16
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17259..18515
DNA (1257bp) protein (419aa)
Pullulanase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DLD3_9FIRM
Pullulanase {ECO:0000313|EMBL:CCX81065.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_038_000M1_scaffold_520_17
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18633..19547)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYM4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81066.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_038_000M1_scaffold_520_18
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19655..19942)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DWR7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX81067.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_038_000M1_scaffold_520_19
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19945..20676)
DNA (732bp) protein (244aa)
Response regulator of the LytR/AlgR family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DLJ7_9FIRM
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CCX81068.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Response regulator of the LytR/AlgR family
L2_038_000M1_scaffold_520_20
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20926..21429
DNA (504bp) protein (168aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L576_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14771.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_520_21
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21962..22909)
DNA (948bp) protein (316aa)
Lactate dehydrogenase and related dehydrogenases (EC:1.1.1.29)
Lactate dehydrogenase and related dehydrogenases {ECO:0000313|EMBL:CBL14770.1}; EC=1.1.1.29 {ECO:0000313|EMBL:CBL14770.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Lactate dehydrogenase and related dehydrogenases n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L575_9FIRM
L2_038_000M1_scaffold_520_22
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23022..23732
DNA (711bp) protein (237aa)
Predicted hydrolase (HAD superfamily) n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYM7_9FIRM
Predicted hydrolase (HAD superfamily) {ECO:0000313|EMBL:CCX81071.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted hydrolase (HAD superfamily)
L2_038_000M1_scaffold_520_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23936..27703
DNA (3768bp) protein (1256aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase n=3 Tax=root RepID=R5DWR9_9FIRM
Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:CCX81072.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_038_000M1_scaffold_520_24
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28036..29004)
DNA (969bp) protein (323aa)
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15)
BirA, biotin-[acetyl-CoA-carboxylase] ligase region n=2 Tax=root RepID=D4L568_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_520_25
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29082..29699)
DNA (618bp) protein (206aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5DQK6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14762.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_520_26
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29824..30591)
DNA (768bp) protein (256aa)
pantothenate kinase, type III (EC:2.7.1.33)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274, ECO:0000313|EMBL:CBL14761.1};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Type III pantothenate kinase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L566_9FIRM
L2_038_000M1_scaffold_520_27
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30834..31682
DNA (849bp) protein (283aa)
Transketolase, N-terminal subunit (EC:2.2.1.1)
Transketolase, N-terminal subunit {ECO:0000313|EMBL:CBL14760.1}; EC=2.2.1.1 {ECO:0000313|EMBL:CBL14760.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Transketolase, N-terminal subunit n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L565_9FIRM
L2_038_000M1_scaffold_520_28
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31682..32632
DNA (951bp) protein (317aa)
Transketolase, C-terminal subunit (EC:2.2.1.1)
Transketolase C-terminal subunit n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DWS4_9FIRM
Transketolase C-terminal subunit {ECO:0000313|EMBL:CCX81077.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_038_000M1_scaffold_520_29
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33060..34154)
DNA (1095bp) protein (365aa)
Ribosome-binding ATPase YchF n=2 Tax=Ruminococcus RepID=D4L562_9FIRM
GTP-binding protein YchF
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_520_30
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34320..34709
DNA (390bp) protein (130aa)
Thioesterase superfamily n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L561_9FIRM
Thioesterase superfamily
Thioesterase superfamily {ECO:0000313|EMBL:CBL14756.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Displaying items 1-30 of 41 in total

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