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L2_038_000M1_scaffold_603

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_038_000M1_scaffold_603_1

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comp(1..294)
DNA (294bp) protein (98aa)
Hedgehog/intein hint domain protein n=1 Tax=human gut metagenome RepID=K1U077_9ZZZZ
Hedgehog/intein hint domain protein {ECO:0000313|EMBL:EKC71780.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L2_038_000M1_scaffold_603_2
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(395..871)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QYV5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC38149.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L2_038_000M1_scaffold_603_3
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(968..1441)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R4Y4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC38151.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L2_038_000M1_scaffold_603_4
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1503..1724)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:603 RepID=R5P4W7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ04761.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
hypothetical protein
L2_038_000M1_scaffold_603_5
unknown

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comp(2255..2575)
DNA (321bp) protein (107aa)

This feature has no annotations

L2_038_000M1_scaffold_603_6
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2589..3803)
DNA (1215bp) protein (405aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. NC2007 RepID=UPI0003B48646
Uncharacterized protein {ECO:0000313|EMBL:EDM64388.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L2_038_000M1_scaffold_603_7
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3966..4325)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R8D4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC39206.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L2_038_000M1_scaffold_603_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4984..6228
DNA (1245bp) protein (415aa)
Fucose 4-O-acetylase and related acetyltransferases n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E1H5_9FIRM
Fucose 4-O-acetylase and related acetyltransferases {ECO:0000313|EMBL:CCX82056.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Fucose 4-O-acetylase and related acetyltransferases
L2_038_000M1_scaffold_603_9
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6440..7153
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DT88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82059.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_038_000M1_scaffold_603_10
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7189..8049
DNA (861bp) protein (287aa)
NAD(P)H-hydrate epimerase {ECO:0000256|HAMAP-Rule:MF_01966}; EC=5.1.99.6 {ECO:0000256|HAMAP-Rule:MF_01966};; NAD(P)HX epimerase {ECO:0000256|HAMAP-Rule:MF_01966}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
NAD(P)H-hydrate epimerase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E1I0_9FIRM
yjeF N-terminal region
L2_038_000M1_scaffold_603_11
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8079..8912
DNA (834bp) protein (278aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DPG5_9FIRM
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CCX82063.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
AraC-type DNA-binding domain-containing proteins
L2_038_000M1_scaffold_603_12
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9114..9959)
DNA (846bp) protein (282aa)
Predicted phosphohydrolases n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5H6_9FIRM
Predicted phosphohydrolases
Predicted phosphohydrolases {ECO:0000313|EMBL:CBL14871.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_603_13
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10200..12077
DNA (1878bp) protein (626aa)
Predicted nucleoside-diphosphate sugar epimerases n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5H5_9FIRM
Predicted nucleoside-diphosphate sugar epimerases {ECO:0000313|EMBL:CBL14870.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Predicted nucleoside-diphosphate sugar epimerases
L2_038_000M1_scaffold_603_14
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12096..13925
DNA (1830bp) protein (610aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000313|EMBL:CBL14869.1};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5H4_9FIRM
L2_038_000M1_scaffold_603_15
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14209..16188
DNA (1980bp) protein (660aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DT94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82069.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_038_000M1_scaffold_603_16
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16214..17479
DNA (1266bp) protein (422aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DP82_9FIRM
L2_038_000M1_scaffold_603_17
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17661..18641
DNA (981bp) protein (327aa)
Isopropylmalate/homocitrate/citramalate synthases (EC:4.1.3.39)
Isopropylmalate/homocitrate/citramalate synthases {ECO:0000313|EMBL:CBL14865.1}; EC=4.1.3.39 {ECO:0000313|EMBL:CBL14865.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Isopropylmalate/homocitrate/citramalate synthases n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5H0_9FIRM
L2_038_000M1_scaffold_603_18
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18754..19689
DNA (936bp) protein (312aa)
orotidine 5'-phosphate decarboxylase, subfamily 2 (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Orotidine 5'-phosphate decarboxylase n=2 Tax=Ruminococcus RepID=D4L5G9_9FIRM
L2_038_000M1_scaffold_603_19
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19842..20927
DNA (1086bp) protein (362aa)
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Phosphoserine aminotransferase n=3 Tax=root RepID=D4L5G8_9FIRM
L2_038_000M1_scaffold_603_20
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21015..22169
DNA (1155bp) protein (385aa)
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
Phosphoglycerate dehydrogenase and related dehydrogenases {ECO:0000313|EMBL:CBL14862.1}; EC=1.1.1.95 {ECO:0000313|EMBL:CBL14862.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Phosphoglycerate dehydrogenase and related dehydrogenases n=2 Tax=Ruminococcus RepID=D4L5G7_9FIRM
L2_038_000M1_scaffold_603_21
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22296..23660)
DNA (1365bp) protein (455aa)
Na+-driven multidrug efflux pump n=2 Tax=root RepID=D4L5G6_9FIRM
Na+-driven multidrug efflux pump
Na+-driven multidrug efflux pump {ECO:0000313|EMBL:CBL14861.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_603_22
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23710..24453
DNA (744bp) protein (248aa)
HAD-superfamily hydrolase subfamily IA variant 3 n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DP89_9FIRM
HAD-superfamily hydrolase subfamily IA variant 3 {ECO:0000313|EMBL:CCX82080.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_038_000M1_scaffold_603_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24870..26663
DNA (1794bp) protein (598aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E1J7_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CCX82081.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_038_000M1_scaffold_603_24
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26786..27688
DNA (903bp) protein (301aa)
Putative efflux protein, MATE family n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5G3_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL14858.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_603_25
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27694..28158
DNA (465bp) protein (155aa)
Putative efflux protein, MATE family n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5G3_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL14858.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_603_26
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28236..29438)
DNA (1203bp) protein (401aa)
Predicted integral membrane protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5G2_9FIRM
Predicted integral membrane protein
Predicted integral membrane protein {ECO:0000313|EMBL:CBL14857.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_603_27
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29460..30458)
DNA (999bp) protein (333aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DTA5_9FIRM
L2_038_000M1_scaffold_603_28
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30474..31658)
DNA (1185bp) protein (395aa)
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5G0_9FIRM
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs {ECO:0000313|EMBL:CBL14855.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_603_29
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32014..33312
DNA (1299bp) protein (433aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5F9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14854.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_038_000M1_scaffold_603_30
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33352..34047
DNA (696bp) protein (232aa)
ADP-ribose pyrophosphatase n=2 Tax=Ruminococcus RepID=D4L5F8_9FIRM
ADP-ribose pyrophosphatase
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:CCX82087.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Displaying items 1-30 of 39 in total

View Taxonomy