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L2_038_000M1_scaffold_618

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_038_000M1_scaffold_618_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

175..1611
DNA (1437bp) protein (479aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P1H0_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI82382.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_038_000M1_scaffold_618_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1677..1874
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9G2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50254.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L2_038_000M1_scaffold_618_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2139..2744)
DNA (606bp) protein (202aa)
Uncharacterized protein (Fragment) n=1 Tax=Bifidobacterium longum subsp. infantis CCUG 52486 RepID=C5EAY3_BIFLI
Uncharacterized protein {ECO:0000313|EMBL:EEQ55158.1}; Flags: Fragment;; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
RarD protein
L2_038_000M1_scaffold_618_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3056..3976)
DNA (921bp) protein (307aa)
Alpha/beta hydrolase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IQA4_BIFBI
Alpha/beta hydrolase {ECO:0000313|EMBL:EKE50955.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
alpha/beta hydrolase
L2_038_000M1_scaffold_618_5
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4217..5317
DNA (1101bp) protein (367aa)
tRNA (adenine-N(1)-)-methyltransferase (EC:2.1.1.36)
tRNA (Adenine-N(1)-)-methyltransferase n=3 Tax=Bifidobacterium RepID=E4P1H8_BIFBP
tRNA (Adenine-N(1)-)-methyltransferase {ECO:0000313|EMBL:CDB23207.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_038_000M1_scaffold_618_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5437..5994
DNA (558bp) protein (186aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2HWW7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50957.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L2_038_000M1_scaffold_618_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6154..8460
DNA (2307bp) protein (769aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E4V9M8_BIFBI
metE; 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase
L2_038_000M1_scaffold_618_8
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8603..9451
DNA (849bp) protein (283aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
metF; 5, 10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GMK7_9BIFI
L2_038_000M1_scaffold_618_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9568..9900)
DNA (333bp) protein (111aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=E4V9N0_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83029.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_038_000M1_scaffold_618_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9982..13080
DNA (3099bp) protein (1033aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|SAAS:SAAS00086160}; EC=2.7.7.42 {ECO:0000256|SAAS:SAAS00086164};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
[glutamate--ammonia-ligase] adenylyltransferase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V9N1_BIFBI
glnE; glutamate-ammonia-ligase adenylyltransferase
L2_038_000M1_scaffold_618_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13187..14182
DNA (996bp) protein (332aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Aspartate carbamoyltransferase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EM91_BIFBS
pyrB; aspartate carbamoyltransferase
L2_038_000M1_scaffold_618_12
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14182..14601
DNA (420bp) protein (140aa)
Aspartate carbamoyltransferase regulatory subunit 1 n=8 Tax=Bifidobacterium RepID=E3EM92_BIFBS
pyrI; aspartate carbamoyl transferase regulatory subunit
Aspartate carbamoyltransferase regulatory subunit 1 {ECO:0000313|EMBL:CDB22908.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_038_000M1_scaffold_618_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14710..16134
DNA (1425bp) protein (475aa)
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Dihydroorotase n=2 Tax=Bifidobacterium bifidum RepID=E4P1P8_BIFBP
L2_038_000M1_scaffold_618_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16205..17170
DNA (966bp) protein (322aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENZ4_BIFBS
pyrF1; Orotidine 5'-phosphate decarboxylase
L2_038_000M1_scaffold_618_15
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17289..18119
DNA (831bp) protein (277aa)
Dihydroorotate dehydrogenase electron transfer subunit n=7 Tax=Bifidobacterium RepID=I3WHV6_BIFBI
pyrK; dihydroorotate dehydrogenase electron transfer subunit
Dihydroorotate dehydrogenase electron transfer subunit {ECO:0000313|EMBL:CCY94938.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L2_038_000M1_scaffold_618_16
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18122..19069
DNA (948bp) protein (316aa)
pyrD; dihydroorotate dehydrogenase, catalytic subunit pyrD (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
Dihydroorotate dehydrogenase n=4 Tax=Bifidobacterium RepID=E4V9N7_BIFBI
L2_038_000M1_scaffold_618_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19091..19789
DNA (699bp) protein (233aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
pyrE; orotate phosphoribosyltransferase PyrE (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E4V9N8_BIFBI
L2_038_000M1_scaffold_618_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19940..20083
DNA (144bp) protein (48aa)
Transcriptional regulator, MerR family n=4 Tax=Bifidobacterium bifidum RepID=E4NWU6_BIFBP
MerR family transcriptional regulator
Putative transcriptional regulator, MerR family {ECO:0000313|EMBL:ADO53105.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_038_000M1_scaffold_618_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20153..21196
DNA (1044bp) protein (348aa)
Adh Alcohol dehydrogenase {ECO:0000313|EMBL:KFI43000.1}; EC=1.1.1.284 {ECO:0000313|EMBL:KFI43000.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
adh; alcohol dehydrogenase (EC:1.1.1.1)
GroES-like protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BXU3_BIFBI
L2_038_000M1_scaffold_618_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21386..22588)
DNA (1203bp) protein (401aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M2Z7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF16396.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L2_038_000M1_scaffold_618_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22807..23037
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M5P9_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF16395.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L2_038_000M1_scaffold_618_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23230..23562
DNA (333bp) protein (111aa)
Serine/threonine protein kinase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHW3_BIFBI
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:AFL04476.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_038_000M1_scaffold_618_23
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23845..26352
DNA (2508bp) protein (836aa)
UvrA Excinuclease ABC subunit A n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GLJ0_9BIFI
UvrA Excinuclease ABC subunit A {ECO:0000313|EMBL:CDB22116.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
uvrA1; excinuclease ABC subunit A
L2_038_000M1_scaffold_618_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26426..27784
DNA (1359bp) protein (453aa)
Na+ driven multidrug efflux pump n=2 Tax=Bifidobacterium RepID=R6GCN9_9BIFI
Na+ driven multidrug efflux pump {ECO:0000313|EMBL:KFI43005.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Na+ driven multidrug efflux pump
L2_038_000M1_scaffold_618_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27937..28647
DNA (711bp) protein (237aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=2 Tax=Bifidobacterium RepID=E4V9P6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:CDB22114.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
short-chain dehydrogenase
L2_038_000M1_scaffold_618_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28650..29366
DNA (717bp) protein (239aa)
Endonuclease III {ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|PIRNR:PIRNR001435};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
Endonuclease III n=3 Tax=Bifidobacterium bifidum RepID=E4V9P7_BIFBI
L2_038_000M1_scaffold_618_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29413..29937
DNA (525bp) protein (175aa)
PadR family transcriptional regulator n=2 Tax=Bifidobacterium bifidum RepID=K2IPM7_BIFBI
PadR family transcriptional regulator {ECO:0000313|EMBL:EKE50685.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
PadR family transcriptional regulator
L2_038_000M1_scaffold_618_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29962..30939
DNA (978bp) protein (326aa)
Putative integral membrane permease protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I742_BIFBI
Putative integral membrane permease protein {ECO:0000313|EMBL:EKE50684.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
putative integral membrane permease protein
L2_038_000M1_scaffold_618_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30965..31333)
DNA (369bp) protein (123aa)
Putative outer membrane protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2LBG9_BIFBI
Putative outer membrane protein {ECO:0000313|EMBL:EKF15199.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L2_038_000M1_scaffold_618_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31438..32583)
DNA (1146bp) protein (382aa)
HipA domain protein n=5 Tax=Bifidobacterium bifidum RepID=E3EP10_BIFBS
HipA domain-containing protein
HipA domain protein {ECO:0000313|EMBL:ERI82950.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98163.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Displaying items 1-30 of 41 in total

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