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L2_038_000M1_scaffold_662

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_038_000M1_scaffold_662_1
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..3173)
DNA (3171bp) protein (1057aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=4 Tax=Clostridiales RepID=D4MUH3_9FIRM
L2_038_000M1_scaffold_662_2
Anaerostipes sp. CAG:276, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3463..4494)
DNA (1032bp) protein (344aa)
Hydrolase, alpha/beta domain protein n=3 Tax=Anaerostipes RepID=B0MIG3_9FIRM
Alpha/beta hydrolase {ECO:0000313|EMBL:CDC36177.1}; TaxID=1262699 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes; environmental samples.;" source="Anaerostipes sp. CAG:276.;"
alpha/beta hydrolase
L2_038_000M1_scaffold_662_3
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4556..5548)
DNA (993bp) protein (331aa)
Putative sugar-binding domain protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MIG4_9FIRM
Putative sugar-binding domain protein {ECO:0000313|EMBL:EDR96088.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
Transcriptional regulator, contains sigma factor-related N-terminal domain
L2_038_000M1_scaffold_662_4
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5625..7265)
DNA (1641bp) protein (547aa)
PTS system mannose/fructose/sorbose family IID component n=3 Tax=Anaerostipes RepID=B0MIG5_9FIRM
PTS system mannose/fructose/sorbose family IID component {ECO:0000313|EMBL:EDR96089.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
PTS system mannose-specific transporter subunit IID
L2_038_000M1_scaffold_662_5
Anaerostipes sp. 3_2_56FAA, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7295..7792)
DNA (498bp) protein (166aa)
PTS system sorbose subfamily IIB protein n=2 Tax=Anaerostipes RepID=E5VRK9_9FIRM
PTS system sorbose subfamily IIB protein {ECO:0000313|EMBL:EFV23491.1}; TaxID=665937 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes sp. 3_2_56FAA.;"
PTS system sorbose subfamily IIB component
L2_038_000M1_scaffold_662_6
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7836..8318)
DNA (483bp) protein (161aa)
PTS system D-glucose-specific IIA component, Man family/PTS system D-glucose-specific IIB component, Man family (EC:2.7.1.69)
PTS system fructose IIA component n=2 Tax=Anaerostipes RepID=R6RNZ5_9FIRM
PTS system fructose IIA component {ECO:0000313|EMBL:EDR96091.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
L2_038_000M1_scaffold_662_7
unknown

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comp(8587..9243)
DNA (657bp) protein (219aa)
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=2 Tax=Clostridiales RepID=D4MUG9_9FIRM
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CBL39035.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L2_038_000M1_scaffold_662_8
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9315..10670)
DNA (1356bp) protein (452aa)
Transporter n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VMR6_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Na+-dependent transporters of the SNF family
L2_038_000M1_scaffold_662_9
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10791..12092)
DNA (1302bp) protein (434aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Phosphomethylpyrimidine synthase n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VMR7_9FIRM
hydroxymethylpyrimidine synthase
L2_038_000M1_scaffold_662_10
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12430..13812)
DNA (1383bp) protein (461aa)
NlpC/P60 family protein n=1 Tax=Lachnospiraceae bacterium 5_1_63FAA RepID=E5VMR8_9FIRM
NlpC/P60 family protein {ECO:0000313|EMBL:EFV15846.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Cell wall-associated hydrolases (invasion-associated proteins)
L2_038_000M1_scaffold_662_11
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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14062..15336
DNA (1275bp) protein (425aa)
Transposase, IS116/IS110/IS902 family n=5 Tax=Clostridiales RepID=B0P2V5_9CLOT
Transposase IS116/IS110/IS902 family protein {ECO:0000313|EMBL:EFV15152.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
transposase
L2_038_000M1_scaffold_662_12
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15530..16474)
DNA (945bp) protein (315aa)
Lactate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
Putative glycerate dehydrogenase n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1PXK7_9FIRM
Putative glycerate dehydrogenase {ECO:0000313|EMBL:EKY20433.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L2_038_000M1_scaffold_662_13
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16683..17045)
DNA (363bp) protein (121aa)
50S ribosomal protein L7/L12 n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5Z608_9FIRM
LSU ribosomal protein L12P
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L2_038_000M1_scaffold_662_14
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17088..17591)
DNA (504bp) protein (168aa)
50S ribosomal protein L10 n=4 Tax=Clostridiales RepID=D4MUG3_9FIRM
LSU ribosomal protein L10P
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L2_038_000M1_scaffold_662_15
unknown

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comp(17675..17779)
DNA (105bp) protein (35aa)

This feature has no annotations

L2_038_000M1_scaffold_662_16
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17914..18606)
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=5 Tax=Clostridiales RepID=D4MUG2_9FIRM
ribosomal protein L1, bacterial/chloroplast
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L2_038_000M1_scaffold_662_17
unknown

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comp(18670..19095)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=5 Tax=Clostridiales RepID=D4MUG1_9FIRM
LSU ribosomal protein L11P
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L2_038_000M1_scaffold_662_18
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19181..19726)
DNA (546bp) protein (182aa)
Transcription termination/antitermination protein NusG n=4 Tax=Clostridiales RepID=D4MUG0_9FIRM
transcription antitermination protein nusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L2_038_000M1_scaffold_662_19
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19742..19939)
DNA (198bp) protein (66aa)
Protein translocase subunit SecE n=3 Tax=Lachnospiraceae RepID=E5VMS5_9FIRM
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
preprotein translocase, SecE subunit, bacterial
L2_038_000M1_scaffold_662_20
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19979..20143)
DNA (165bp) protein (55aa)
50S ribosomal protein L33 n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JXY1_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
LSU ribosomal protein L33P
L2_038_000M1_scaffold_662_21
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20465..21670)
DNA (1206bp) protein (402aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=B0P4Q3_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKY20425.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L2_038_000M1_scaffold_662_22
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21682..22626)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1PXF6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKY20424.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
hypothetical protein
L2_038_000M1_scaffold_662_23
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22675..23172)
DNA (498bp) protein (166aa)
7-cyano-7-deazaguanine reductase (EC:1.7.1.13)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
NADPH-dependent 7-cyano-7-deazaguanine reductase n=4 Tax=Clostridiales RepID=D4MUF6_9FIRM
L2_038_000M1_scaffold_662_24
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23169..26033)
DNA (2865bp) protein (955aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5Z601_9FIRM
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CDA32054.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
diguanylate cyclase (GGDEF) domain
L2_038_000M1_scaffold_662_25
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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26382..27800
DNA (1419bp) protein (473aa)
Iron-only hydrogenase maturation rSAM protein HydG n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1PXQ1_9FIRM
Iron-only hydrogenase maturation rSAM protein HydG {ECO:0000313|EMBL:EKY20421.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
iron-only hydrogenase maturation protein HydG
L2_038_000M1_scaffold_662_26
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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27810..28403
DNA (594bp) protein (198aa)
NUDIX domain-containing protein n=3 Tax=Lachnospiraceae RepID=E5VMT3_9FIRM
NUDIX domain-containing protein {ECO:0000313|EMBL:CDA32052.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
NUDIX domain.
L2_038_000M1_scaffold_662_27
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28451..28708)
DNA (258bp) protein (86aa)
Phosphocarrier, HPr family n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MAU9_9FIRM
Phosphocarrier, HPr family {ECO:0000313|EMBL:EDR98624.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
phosphotransferase system phosphocarrier protein HPr
L2_038_000M1_scaffold_662_28
Anaerostipes sp. CAG:276, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28695..29285)
DNA (591bp) protein (197aa)
Uncharacterized protein n=2 Tax=Anaerostipes RepID=R6RK67_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC34882.1}; TaxID=1262699 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes; environmental samples.;" source="Anaerostipes sp. CAG:276.;"
L2_038_000M1_scaffold_662_29
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29300..30778)
DNA (1479bp) protein (493aa)
Carbohydrate kinase, FGGY family protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MAV1_9FIRM
Carbohydrate kinase, FGGY family protein {ECO:0000313|EMBL:EDR98626.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
xylB; hypothetical protein
L2_038_000M1_scaffold_662_30
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30783..31829)
DNA (1047bp) protein (349aa)
GroES-like protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MAV2_9FIRM
GroES-like protein {ECO:0000313|EMBL:EDR98627.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
Oxidoreductase, zinc-binding dehydrogenase family
Displaying items 1-30 of 50 in total

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