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L2_038_000M1_scaffold_694

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_038_000M1_scaffold_694_1

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120..503
DNA (384bp) protein (128aa)
YjgF-like protein (Fragment) n=1 Tax=human gut metagenome RepID=K1TNJ9_9ZZZZ
YjgF-like protein {ECO:0000313|EMBL:EKC60881.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
TdcF; putative translation initiation inhibitor
L2_038_000M1_scaffold_694_2

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881..1312
DNA (432bp) protein (144aa)
Translation initiation factor IF-3 n=1 Tax=human gut metagenome RepID=K1TB02_9ZZZZ
Translation initiation factor IF-3 {ECO:0000313|EMBL:EKC64624.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
infC; Translation initiation factor IF-3
L2_038_000M1_scaffold_694_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1340..1546
DNA (207bp) protein (69aa)
50S ribosomal protein L35 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPX2_9FIRM
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
LSU ribosomal protein L35P
L2_038_000M1_scaffold_694_4

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1605..1958
DNA (354bp) protein (118aa)
Ribosomal protein L20, bacterial-type n=1 Tax=human gut metagenome RepID=K1S811_9ZZZZ
Ribosomal protein L20, bacterial-type {ECO:0000313|EMBL:EKC56772.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
LSU ribosomal protein L20P
L2_038_000M1_scaffold_694_5

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1981..2814
DNA (834bp) protein (278aa)
SpoU rRNA methylase family protein (Fragment) n=2 Tax=human gut metagenome RepID=K1TC04_9ZZZZ
SpoU rRNA methylase family protein {ECO:0000313|EMBL:EKC56771.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
rRNA methylases
L2_038_000M1_scaffold_694_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2821..3918
DNA (1098bp) protein (366aa)
DNA protecting protein DprA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPW6_9FIRM
DNA protecting protein DprA {ECO:0000313|EMBL:EFB75312.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
smf; Smf protein
L2_038_000M1_scaffold_694_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4028..6355
DNA (2328bp) protein (776aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPW5_9FIRM
L2_038_000M1_scaffold_694_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6359..7672
DNA (1314bp) protein (438aa)
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO {ECO:0000256|HAMAP-Rule:MF_01037}; EC=2.1.1.74 {ECO:0000256|HAMAP-Rule:MF_01037};; Folate-dependent tRNA (uracil-5-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; Folate-dependent tRNA(M-5-U54)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01037}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPW4_9FIRM
tRNA:m(5)U-54 methyltransferase
L2_038_000M1_scaffold_694_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7681..8715
DNA (1035bp) protein (345aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Phosphate acyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPW3_9FIRM
phosphate:acyl-[acyl carrier protein] acyltransferase
L2_038_000M1_scaffold_694_10

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8818..9495
DNA (678bp) protein (226aa)
Ribonuclease III {ECO:0000313|EMBL:EKC63771.1}; EC=3.-.-.- {ECO:0000313|EMBL:EKC63771.1};; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
RNAse III (EC:3.1.26.3)
Ribonuclease III (Fragment) n=1 Tax=human gut metagenome RepID=K1TX07_9ZZZZ
L2_038_000M1_scaffold_694_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9508..13065
DNA (3558bp) protein (1186aa)
Chromosome partition protein Smc n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPW1_9FIRM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
condensin subunit Smc
L2_038_000M1_scaffold_694_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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13084..14058
DNA (975bp) protein (325aa)
Signal recognition particle receptor FtsY n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPW0_9FIRM
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
signal recognition particle-docking protein FtsY
L2_038_000M1_scaffold_694_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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14055..14687
DNA (633bp) protein (211aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPV9_9FIRM
L2_038_000M1_scaffold_694_14

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14747..15049
DNA (303bp) protein (101aa)
Protein containing RNA-binding, CRM domain protein n=1 Tax=human gut metagenome RepID=K1SQ15_9ZZZZ
Protein containing RNA-binding, CRM domain protein {ECO:0000313|EMBL:EKC62802.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Predicted RNA-binding protein containing KH domain, possibly ribosomal protein
L2_038_000M1_scaffold_694_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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15051..15653
DNA (603bp) protein (201aa)
Nicotinate-nucleotide adenylyltransferase {ECO:0000256|SAAS:SAAS00086517}; EC=2.7.7.18 {ECO:0000256|SAAS:SAAS00086517};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Nicotinate-nucleotide adenylyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPV7_9FIRM
L2_038_000M1_scaffold_694_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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15700..16269
DNA (570bp) protein (190aa)
Nicotinate-nucleotide adenylyltransferase {ECO:0000256|SAAS:SAAS00086517}; EC=2.7.7.18 {ECO:0000256|SAAS:SAAS00086517};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Nicotinate-nucleotide adenylyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPV7_9FIRM
conserved hypothetical protein TIGR00488
L2_038_000M1_scaffold_694_17

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16358..18298
DNA (1941bp) protein (647aa)
Transcriptional regulator (Fragment) n=1 Tax=human gut metagenome RepID=K1TKL8_9ZZZZ
Transcriptional regulator {ECO:0000313|EMBL:EKC73652.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
cell envelope-related function transcriptional attenuator common domain
L2_038_000M1_scaffold_694_18

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18325..18696
DNA (372bp) protein (124aa)
Iojap-related protein n=1 Tax=human gut metagenome RepID=K1UNZ4_9ZZZZ
Iojap-related protein {ECO:0000313|EMBL:EKC79900.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
iojap-related protein
L2_038_000M1_scaffold_694_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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18873..21416
DNA (2544bp) protein (848aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
leucyl-tRNA synthetase, eubacterial and mitochondrial family (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPV4_9FIRM
L2_038_000M1_scaffold_694_20
unknown

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21427..23112
DNA (1686bp) protein (562aa)

This feature has no annotations

L2_038_000M1_scaffold_694_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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23160..24128
DNA (969bp) protein (323aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB75299.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB75299.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPV3_9FIRM
glycosyl transferase family protein
L2_038_000M1_scaffold_694_22

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24125..25459
DNA (1335bp) protein (445aa)
MATE efflux family protein n=2 Tax=human gut metagenome RepID=K1USB2_9ZZZZ
MATE efflux family protein {ECO:0000313|EMBL:EKC81180.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
MATE efflux family protein
L2_038_000M1_scaffold_694_23
unknown

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25603..26202
DNA (600bp) protein (200aa)

This feature has no annotations

L2_038_000M1_scaffold_694_24
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26309..27025
DNA (717bp) protein (239aa)
Sortase family protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAB5_9CLOT
Sortase family protein {ECO:0000313|EMBL:EEG31555.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
LPXTG-site transpeptidase (sortase) family protein
L2_038_000M1_scaffold_694_25
Enterococcus mundtii, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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27012..27890
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Enterococcus mundtii ATCC 882 RepID=R2QIB1_ENTMU
Uncharacterized protein {ECO:0000313|EMBL:EOH63269.1}; TaxID=1158598 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus mundtii ATCC 882.;"
hypothetical protein
L2_038_000M1_scaffold_694_26
unknown

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27922..28023
DNA (102bp) protein (34aa)

This feature has no annotations

L2_038_000M1_scaffold_694_27
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28335..29198)
DNA (864bp) protein (288aa)
fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist (EC:4.1.2.13)
Fructose-1 6-bisphosphate aldolase class II various bacterial and amitochondriate protist n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6PSH2_9FIRM
Fructose-1 6-bisphosphate aldolase class II various bacterial and amitochondriate protist {ECO:0000313|EMBL:CDC27348.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L2_038_000M1_scaffold_694_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29746..31533)
DNA (1788bp) protein (596aa)
Peptidase, M24 family {ECO:0000313|EMBL:EFB75083.1}; EC=3.4.-.- {ECO:0000313|EMBL:EFB75083.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Xaa-Pro aminopeptidase (EC:3.4.11.9)
Peptidase, M24 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQG0_9FIRM
L2_038_000M1_scaffold_694_29

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comp(31597..32232)
DNA (636bp) protein (212aa)
Capsular exopolysaccharide family n=1 Tax=human gut metagenome RepID=K1T844_9ZZZZ
Capsular exopolysaccharide family {ECO:0000313|EMBL:EKC62540.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
ATPases involved in chromosome partitioning
L2_038_000M1_scaffold_694_30
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32229..32942)
DNA (714bp) protein (238aa)
Capsular polysaccharide biosynthesis protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M2S1_9FIRM
Capsular polysaccharide biosynthesis protein
Capsular polysaccharide biosynthesis protein {ECO:0000313|EMBL:CBL25533.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Displaying items 1-30 of 42 in total

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